TCONS_00010816-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010816-protein
Unique NameTCONS_00010816-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010816-protein ID=TCONS_00010816-protein|Name=TCONS_00010816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MSEIQQSVNDSISELRNDATKNSSDSKKRSRSRSRDRDRRRRSRSRSRDR
RRRRSRSRERRDEKKISKPSRPKRQTLWDKAPKGYEDITPVQFKSMRAAG
QVEMPTPLSGGVIPATALPQGAQMTMQARRLYCGNLPFGITEDLMIDFFN
AKMRESDLARNSGNPVLACQINLEKNFAFLEFRSVEETTLAMAFDGIILQ
GQALKIRRPKDYHPIPGITETQQTHIPGVVSTVVPDTENKVFIGGLPNYL
NEDQVKELLSAFGELRAFNLVKDSATGLSKGYAFCEYVDIGITDVAIAGM
NGMQLGDKKLVVQRASVGSKSMPAQLTIPGFDFSKEIQSTNVLCLMNMIT
PEELMDDEDYDEIFDDIREECSKFGRIRSLQIPRPSQEHQVSGVGKIFIE
YATPNEAKAASEALAGRKFASRVVVTSYYDPDKYYRSELA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006068XLOC_006068Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010816TCONS_00010816Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
IPR006529U2AF_lg
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 343..427
e-value: 0.0039
score: 26.4
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 342..427
e-value: 0.32
score: 11.0
coord: 130..207
e-value: 4.7E-9
score: 46.1
coord: 240..313
e-value: 6.7E-19
score: 78.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 365..424
e-value: 1.7E-6
score: 27.6
coord: 131..205
e-value: 8.6E-5
score: 22.2
coord: 241..310
e-value: 1.3E-16
score: 60.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 129..211
score: 12.27
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 239..317
score: 15.545
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 341..431
score: 10.309
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 129..213
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 236..433
NoneNo IPR availableGENE3D3.30.70.330coord: 335..440
e-value: 3.0E-18
score: 65.3
NoneNo IPR availableGENE3D3.30.70.330coord: 8..215
e-value: 2.8E-21
score: 75.4
NoneNo IPR availableGENE3D3.30.70.330coord: 218..325
e-value: 6.7E-21
score: 74.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..83
NoneNo IPR availableCDDcd12231RRM2_U2AF65coord: 239..315
e-value: 1.00532E-49
score: 163.941
NoneNo IPR availableCDDcd12230RRM1_U2AF65coord: 128..209
e-value: 5.93982E-44
score: 148.843
NoneNo IPR availableCDDcd12232RRM3_U2AF65coord: 340..427
e-value: 5.5456E-42
score: 143.851
IPR006529U2 snRNP auxilliary factor, large subunit, splicing factorTIGRFAMTIGR01642TIGR01642coord: 21..437
e-value: 1.2E-125
score: 417.9

Blast
[Close]
BLAST of TCONS_00010816-protein vs. Swiss-Prot (Human)
Match: U2AF2 (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4)

HSP 1 Score: 460.299 bits (1183), Expect = 4.619e-160
Identity = 239/404 (59.16%), Postives = 298/404 (73.76%), Query Frame = 0 
Query:   58 RERRDEKKISKPSRPKRQTLWDKAPKGYEDITPVQFKSMRAAGQVE----MPT--PLSGGVIPATALPQGAQMTMQARRLYCGNLPFGITEDLMIDFFNAKMRESDLARNSGNPVLACQINLEKNFAFLEFRSVEETTLAMAFDGIILQGQALKIRRPKDYHPIPGITETQQTHIPGVVSTVVPDTENKVFIGGLPNYLNEDQVKELLSAFGELRAFNLVKDSATGLSKGYAFCEYVDIGITDVAIAGMNGMQLGDKKLVVQRASVGSKS------------MPAQLTIPGFDFSKEIQ----STNVLCLMNMITPEELMDDEDYDEIFDDIREECSKFGRIRSLQIPRPSQEHQVSGVGKIFIEYATPNEAKAASEALAGRKFASRVVVTSYYDPDKYYRSEL 439
            R  R EKK       K +  WD  P G+E ITP+Q+K+M+AAGQ+     +PT  P    V P      G+QMT QARRLY GN+PFGITE+ M+DFFNA+MR   L +  GNPVLA QIN +KNFAFLEFRSV+ETT AMAFDGII QGQ+LKIRRP DY P+PG++E    ++PGVVSTVVPD+ +K+FIGGLPNYLN+DQVKELL++FG L+AFNLVKDSATGLSKGYAFCEYVDI +TD AIAG+NGMQLGDKKL+VQRASVG+K+             P  L +PG   S ++Q     T VLCLMNM+ PEEL+DDE+Y+EI +D+R+ECSK+G ++S++IPRP    +V G GKIF+E+ +  + + A + L GRKFA+RVVVT Y DPD Y+R + 
Sbjct:   78 RSPRHEKK------KKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGL-MSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
The following BLAST results are available for this feature:
BLAST of TCONS_00010816-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
U2AF24.619e-16059.16Splicing factor U2AF 65 kDa subunit OS=Homo sapien... [more]
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