TCONS_00010860-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010860-protein
Unique NameTCONS_00010860-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010860-protein ID=TCONS_00010860-protein|Name=TCONS_00010860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MAAKLFTIIFLLVTYSATISSISVSKQPKNNNKEITNNNGGSNDDNKTPC
QRKIEEDEKRRAAIRKDMLDLFGIQFRPNPDLFGHLSRNTLSAKKYMYDL
YKTSVTSDCVTSQPKQTNVTMEMMKDADTVVSFVNTNALVPRPNISDEDG
SMYFDVQSNFVVKRTLASELRLYLDASNKTVPDSRLRVTLYEIVVPKKRY
RKLVSIEINATESAWHGLDVLDATKRWKQDSTTNNGVLVVCQTLDKKMKS
LADCGLVDFKGENENKPFLVSFYQSGDEEEILAEQVPWKEEEEIYKSSEH
ARRRRALEGLKDLFPQVENIASGFGGMSGGPNKKNTSICKRKPLFIGFKD
LGWSDWIMAPEGYKASYCEGECKFARHDHSXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXRHDHSNESTNHALIQTLVNLMFPKYVPPPCCAPIRLEP
LQVLFLDERNNVIMKKYANMVVNDCACQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006101XLOC_006101Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010860TCONS_00010860Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001839TGF-b_C
IPR029034Cystine-knot_cytokine
IPR001111TGF-b_propeptide
IPR017948TGFb_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 413..413
IPR001839Transforming growth factor-beta, C-terminalSMARTSM00204TGFB_2coord: 339..478
e-value: 4.7E-35
score: 132.5
IPR001839Transforming growth factor-beta, C-terminalPFAMPF00019TGF_betacoord: 415..477
e-value: 2.0E-13
score: 51.1
coord: 339..376
e-value: 1.8E-11
score: 44.7
IPR001839Transforming growth factor-beta, C-terminalPROSITEPS51362TGF_BETA_2coord: 302..478
score: 35.465
IPR029034Cystine-knot cytokineGENE3D2.10.90.10coord: 330..478
e-value: 2.0E-34
score: 118.1
IPR029034Cystine-knot cytokineSUPERFAMILY57501Cystine-knot cytokinescoord: 417..477
IPR029034Cystine-knot cytokineSUPERFAMILY57501Cystine-knot cytokinescoord: 333..379
IPR001111TGF-beta, propeptidePFAMPF00688TGFb_propeptidecoord: 57..272
e-value: 3.1E-29
score: 102.4
IPR017948Transforming growth factor beta, conserved sitePROSITEPS00250TGF_BETA_1coord: 357..372

Blast
[Close]
BLAST of TCONS_00010860-protein vs. Swiss-Prot (Human)
Match: BMP5 (Bone morphogenetic protein 5 OS=Homo sapiens GN=BMP5 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.521e-51
Identity = 133/492 (27.03%), Postives = 206/492 (41.87%), Query Frame = 0 
Query:   41 GSNDDNKTPCQRKIEEDEKRRAAIRKDMLDLFGIQFRPNPDLFGHLSRNTLSAKKYMYDLY------------------------------------------KTSVTSDCVTSQPKQTNVT-MEMMKDADTVVSFVNTNALVPRPNISDEDGSMY----FDVQSNFVVKRTLASELRLYLDASNKTVPDSRLRVTLYEIVVPKKRYRK-------LVSIEINATESAWHGLDVLDATKRWKQDSTTNNGVLVVCQTLDKKMKSLADCGLVDFKGENENKPFLVSFYQSGDEEEILAEQVPWKEEEEIYKSSEHARRRRALEGLKDLFPQVENIASGFGGMSGGPNKKNTSICKRKPLFIGFKDLGWSDWIMAPEGYKASYCEGECKFARHDHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHDHSNESTNHALIQTLVNLMFPKYVPPPCCAPIRLEPLQVLFLDERNNVIMKKYANMVVNDCACQ 478
            G N  + +   R++   E+R   I++++L + G+  RP P   G   +   SA  +M DLY                                          + S T+   T  P   ++     + DAD V+SFVN   LV R          Y    FD+      +   A+E R+Y D SN    +  +++++Y+I+   K Y         L + +  A +  W   D+   +  W  +   N G+ +  +T D +  ++   GLV  +G    +PF+V+F+               K  E + +S   A +R+     K    Q  +  S  G  +    K+    CK+  L++ F+DLGW DWI+APEGY A YC+GEC F  + H                                        +TNHA++QTLV+LMFP +VP PCCAP +L  + VL+ D+ +NVI+KKY NMVV  C C 
Sbjct:   30 GDNHVHSSFIYRRLRNHERRE--IQREILSILGLPHRPRPFSPG---KQASSAPLFMLDLYNAMTNEENPEESEYSVRASLAEETRGARKGYPASPNGYPRRIQLSRTTPLTTQSPPLASLHDTNFLNDADMVMSFVN---LVERDKDFSHQRRHYKEFRFDLTQIPHGEAVTAAEFRIYKDRSNNRFENETIKISIYQII---KEYTNRDADLFLLDTRKAQALDVGWLVFDITVTSNHWVINPQNNLGLQLCAETGDGRSINVKSAGLVGRQGPQSKQPFMVAFF---------------KASEVLLRSVRAANKRKNQNRNKSSSHQDSSRMSSVGDYNTSEQKQ---ACKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHM--------------------------------------NATNHAIVQTLVHLMFPDHVPKPCCAPTKLNAISVLYFDDSSNVILKKYRNMVVRSCGCH 454
The following BLAST results are available for this feature:
BLAST of TCONS_00010860-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BMP54.521e-5127.03Bone morphogenetic protein 5 OS=Homo sapiens GN=BM... [more]
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