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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00010866-protein ID=TCONS_00010866-protein|Name=TCONS_00010866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=821bp
MRLFCLIGFWLSLGCVFCRPDLFHENDDDDGYAVCKYGPCLNGGVCTAHP
DKYYCSCLPGWIGTNCERRNACFPNPCHYGICSPNMDGFTCTCKAGFKGN
LCNVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINP
CLNGGTCREFVDHYYCACPLSFRGVNCEDYISPTKPPPTIPLKQVGPQAI
PAPMNAPNSDIRDVFTYRSTDQYGNPYSETHEEIRKGPQGLVNPGASLVP
HPVALAAMNEAPGTHFVGAPNLAEHGDVIMHSSREDDKAVVSTSTSEDEI
KNLPENIKDDRYQTHFVEVDKDNEGHEYKHKSLSHNHLHVGESVGVGEYA
QQKHAPNNDEEAGKVISDVEKHHEEIKENSHQQHDHDEHISNEKHVPQNV
FVDHSYLDLPHHARQHEQSSKTFETKQTIEAQASERSKLDRPDAETSEMS
KQNLNRNGSPSSDDDNKSNIKTIGDMLKMFDQATKTLSTKIIKSANKVML
REGKAPYIPQVEKSGKSNSNHQSRSGQIGNATQSPFSEMKHFMQNLYNLT
NKITNINNAKSGVGASMKGVKKHALGATDDLYKHFTDHQKNAYTSWRRQA
LINYHARNPGKPVPRNTVSLSENSLCPKFCRLFCDPWCVKIGCCKLSQEK
LNIYKEIEEKQEAHLKNTKPSGLLLPDEVEENVQTTKRQHNNDNDVTLTR
QPTATNNETLNDNCRKCNENADCVQGSEQKGCVCKPGFSGDGKVCTVDTC
MLCHLDAECEGERCFCKNNFEGDGYECRPLHASKRNQCSDCHLKADCTSG
ECVCSMGYYGNGKNCWPIPII Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001881 | EGF-like calcium-binding domain | SMART | SM00179 | egfca_6 | coord: 145..178
e-value: 0.018
score: 15.9
coord: 105..140
e-value: 0.22
score: 7.1
coord: 35..67
e-value: 0.0046
score: 20.7
coord: 68..103
e-value: 0.011
score: 17.7 |
| IPR000742 | EGF-like domain | SMART | SM00181 | egf_5 | coord: 71..103
e-value: 0.0011
score: 28.3
coord: 144..178
e-value: 8.0E-5
score: 32.0
coord: 776..816
e-value: 45.0
score: 8.5
coord: 107..140
e-value: 1.5E-4
score: 31.1
coord: 713..746
e-value: 91.0
score: 5.0
coord: 34..67
e-value: 1.2E-5
score: 34.8 |
| IPR000742 | EGF-like domain | PFAM | PF00008 | EGF | coord: 108..137
e-value: 1.9E-7
score: 31.1
coord: 145..174
e-value: 1.7E-6
score: 28.1 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 31..67
score: 18.095 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 104..140
score: 20.206 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 141..178
score: 17.858 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 68..103
score: 13.056 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 710..746
score: 7.496 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 32..69
e-value: 3.6E-10
score: 39.1 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 752..778
e-value: 0.041
score: 13.6
coord: 789..816
e-value: 0.019
score: 14.7
coord: 714..746
e-value: 7.0E-5
score: 22.5 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 106..142
e-value: 1.2E-10
score: 40.9 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 143..181
e-value: 2.8E-10
score: 39.7 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 70..105
e-value: 1.1E-6
score: 28.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 374..396 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 509..533 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 413..470 |
| None | No IPR available | PROSITE | PS51257 | PROKAR_LIPOPROTEIN | coord: 1..15
score: 5.0 |
| None | No IPR available | CDD | cd00054 | EGF_CA | coord: 110..140
e-value: 3.1875E-5
score: 41.4682 |
| None | No IPR available | CDD | cd00054 | EGF_CA | coord: 145..178
e-value: 3.08514E-6
score: 44.1646 |
| None | No IPR available | CDD | cd00054 | EGF_CA | coord: 37..67
e-value: 4.96334E-5
score: 40.6978 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 69..104 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 105..142 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 33..68 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 144..183 |
| IPR013032 | EGF-like, conserved site | PFAM | PF12661 | hEGF | coord: 40..61
e-value: 2.4E-4
score: 21.5 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS01186 | EGF_2 | coord: 732..745 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS01186 | EGF_2 | coord: 55..66 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 55..66 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS01186 | EGF_2 | coord: 128..139 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS01186 | EGF_2 | coord: 91..102 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 91..102 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 166..177 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 128..139 |
Blast
BLAST of TCONS_00010866-protein vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 1.307e-28 Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 0
Query: 35 CKYGPCLNGGVC---------------------TAHP-DKYYCSCLPGWIGTNCERR-NACFPNPCHYG-ICSPNMDGFTCTCKAGFKGNLCNV-LDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINPCLNGGTCREFVDHYYCACPLSFRGVNCE 178
C +GPC NGG C P + C CLPG+ G+ CE + C P+PCH G C + GF+C+C GF G C ++ C +PC N +C C C G+ G++CE NPC NGG+C+ VD YYC CP G +CE
Sbjct: 3806 CVHGPCQNGGSCLRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCE 3974 HSP 2 Score: 85.8853 bits (211), Expect = 7.285e-17 Identity = 42/112 (37.50%), Postives = 54/112 (48.21%), Query Frame = 0
Query: 35 CKYGPCLNGGVCTAHPDKYYCSCLPGWIGTNCERR-NACFPNPCHYGICSPNMDG-FTCTCKAGFKGNLC-NVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMES 143
C PC +GG C + CSC G+ G CER N C +PC G N G F C CK G+ G +C + +++C NPC N G C C C G G+ CE+ S
Sbjct: 3866 CLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCELNS 3977
The following BLAST results are available for this feature:
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