TCONS_00011201-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011201-protein
Unique NameTCONS_00011201-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length184

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011201-protein ID=TCONS_00011201-protein|Name=TCONS_00011201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MAFVQRFIDWIKSLFWKEEMELTLVGLQFSGKTTFVNVIASGQYNEDMIP
TVGFNMRKVTKGNVTIKLWDIGGQPRFRTMWERYCRGVNCIVYMVDAADH
DKTELAKQELHGLLQKPQLAGIPMLVLGNKRDLPNAYTEKELIEKLNLGT
VQDREICCYSISCKERDNIDITLQWLIQHSKSRT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006275XLOC_006275Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011201TCONS_00011201Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 77..102
score: 39.14
coord: 21..44
score: 26.23
coord: 122..143
score: 53.21
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 11..178
e-value: 5.6E-45
score: 152.8
NoneNo IPR availableSMARTSM00178sar_sub_1coord: 4..180
e-value: 2.7E-17
score: 73.4
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 3..184
e-value: 3.4E-31
score: 119.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 20..183
e-value: 1.0E-5
score: -38.5
NoneNo IPR availableGENE3D3.40.50.300coord: 4..184
e-value: 6.8E-44
score: 148.8
NoneNo IPR availableCDDcd04159Arl10_likecoord: 21..179
e-value: 2.45765E-110
score: 313.871
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 19..149
e-value: 2.1E-16
score: 58.1
IPR024156Small GTPase superfamily, ARF typePROSITEPS51417ARFcoord: 13..180
score: 20.976
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 16..181

Blast
[Close]
BLAST of TCONS_00011201-protein vs. Swiss-Prot (Human)
Match: ARL8B (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 6.333e-117
Identity = 149/183 (81.42%), Postives = 167/183 (91.26%), Query Frame = 0 
Query:    1 MAFVQRFIDWIKSLFWKEEMELTLVGLQFSGKTTFVNVIASGQYNEDMIPTVGFNMRKVTKGNVTIKLWDIGGQPRFRTMWERYCRGVNCIVYMVDAADHDKTELAKQELHGLLQKPQLAGIPMLVLGNKRDLPNAYTEKELIEKLNLGTVQDREICCYSISCKERDNIDITLQWLIQHSKSR 183
            +A + R +DW +SLFWKEEMELTLVGLQ+SGKTTFVNVIASGQ++EDMIPTVGFNMRKVTKGNVTIK+WDIGGQPRFR+MWERYCRGVN IVYM+DAAD +K E ++ ELH LL KPQL GIP+LVLGNKRDLPNA  EK+LIEK+NL  +QDREICCYSISCKE+DNIDITLQWLIQHSKSR
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184
The following BLAST results are available for this feature:
BLAST of TCONS_00011201-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL8B6.333e-11781.42ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
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