TCONS_00011217-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011217-protein
Unique NameTCONS_00011217-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011217-protein ID=TCONS_00011217-protein|Name=TCONS_00011217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
GFLPGMKQIGNVASLPGIVKNSIGLPDIHSGYGFAIGNMAAFDMSNPDSV
VSPGGVGFDINCGVRLIRTNLSVKDVEPVKEQLAQSLFDHIPVGVGSKGI
IPMGAKDLDEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPSKVSVK
AKKRGLPQLGTLGAGNHYAEIQVVDEIFDNYAAKTMGLDRKGQVCIMIHC
GSRGLGHQVATDALVAMERAMSRDNIEVNDRQLACARIGSTEGKNYLSAM
AAAANYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHMIYDVSHNVAKIEE
HIVENKLKTLLVHRKGATRAFPPHHPLIPVDYQITGQPVLIGGSMGTCSY
VLTGTEHGMKETFGTTCHGAGRALSRAKSRRNLDYLEVLDKLKEKGIAIR
VASPKLVMEEAPESYKDVTDVVDTCHAVGISKKAIKLRPIAVIKG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006279XLOC_006279Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011217TCONS_00011217Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001233RtcB
IPR027513RtcB_euk
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: Molecular Function
TermDefinition
GO:0008452RNA ligase activity
GO:0003972RNA ligase (ATP) activity
Vocabulary: Cellular Component
TermDefinition
GO:0072669tRNA-splicing ligase complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
cellular_component GO:0072669 tRNA-splicing ligase complex
molecular_function GO:0008452 RNA ligase activity
molecular_function GO:0003972 RNA ligase (ATP) activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001233tRNA-splicing ligase, RtcBPFAMPF01139RtcBcoord: 8..445
e-value: 1.2E-148
score: 495.6
IPR001233tRNA-splicing ligase, RtcBPROSITEPS01288UPF0027coord: 8..37
IPR001233tRNA-splicing ligase, RtcBSUPERFAMILY103365Hypothetical protein PH1602coord: 6..445
IPR027513tRNA-splicing ligase RtcB homologue, eukaryoticHAMAPMF_03144RtcB_eukcoord: 1..445
score: 55.901

Blast
[Close]
BLAST of TCONS_00011217-protein vs. Swiss-Prot (Human)
Match: RTCB (tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=RTCB PE=1 SV=1)

HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 377/445 (84.72%), Postives = 414/445 (93.03%), Query Frame = 0 
Query:    1 GFLPGMKQIGNVASLPGIVKNSIGLPDIHSGYGFAIGNMAAFDMSNPDSVVSPGGVGFDINCGVRLIRTNLSVKDVEPVKEQLAQSLFDHIPVGVGSKGIIPMGAKDLDEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPSKVSVKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDNYAAKTMGLDRKGQVCIMIHCGSRGLGHQVATDALVAMERAMSRDNIEVNDRQLACARIGSTEGKNYLSAMAAAANYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHMIYDVSHNVAKIEEHIVENKLKTLLVHRKGATRAFPPHHPLIPVDYQITGQPVLIGGSMGTCSYVLTGTEHGMKETFGTTCHGAGRALSRAKSRRNLDYLEVLDKLKEKGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAVGISKKAIKLRPIAVIKG 445
            GFLP MKQIGNVA+LPGIV  SIGLPD+HSGYGFAIGNMAAFDM++P++VVSPGGVGFDINCGVRL+RTNL   DV+PVKEQLAQ++FDHIPVGVGSKG+IPM AKDL+EALEMG+DWSLREGY WAEDKEHCEEYGRMLQADP+KVS +AKKRGLPQLGTLGAGNHYAEIQVVDEIF+ YAAK MG+D KGQVC+MIH GSRGLGHQVATDALVAME+AM RD I VNDRQLACARI S EG++YL  MAAA NYAWVNRSSMTFLTRQAFAKVFNTTPDDLD+H+IYDVSHN+AK+E+H+V+ K +TLLVHRKG+TRAFPPHHPLI VDYQ+TGQPVLIGG+MGTCSYVLTGTE GM ETFGTTCHGAGRALSRAKSRRNLD+ +VLDKL + GIAIRVASPKLVMEEAPESYK+VTDVV+TCH  GISKKAIKLRPIAVIKG
Sbjct:   61 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
The following BLAST results are available for this feature:
BLAST of TCONS_00011217-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTCB0.000e+084.72tRNA-splicing ligase RtcB homolog OS=Homo sapiens ... [more]
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