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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00011437-protein ID=TCONS_00011437-protein|Name=TCONS_00011437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1393bp
MASDVPAFLEVGTPVSAKFKGAFCEATIKSVKKLVKFKVQYKDGTGSSVV
QDDTIEGEYKLGSLVLVKQDDGEKKPATIQKMNDHSYYTVVFDDGDERTL
KRTNVVVMGERHFLEHENLDNLPLTDPENFLSPVVLSSEKRRKRRRSAAN
LEEEDSDSDNKRELHKEFLGKVVCIEVGDRKRSWFPALGVKHHGSHSESQ
VFVQSFKDGKRTLVNRDDVKEFSKTRDPLQSFLKGESRPDPVLKSAVEKA
VAYKDMGELPKGWNILDTIDEKEESSDEDLPSTPVLSAEDKSFHETLYSF
LSKQGTNISKPPFVNNQGVNLHKFYKLVQEEYGGMDDITNQQWRSIYKQL
GLRNIHTTASFNMKNLYKKYLQPWEENEKTRSSPRLQEQNNAKRKRKSGT
AAALKDEADRLSTKSESDSEPERRRSTRGATRAATMEKTPELAATERKRR
SNVTTPLESSSLSDVDKEDSKESIKKEKEETKKFDSKLSELEDVDVINSP
QSSITSDGTTENNASVEGDEHETVDEKKFGKYKMGCKISVRYGNGKNQRT
YTAKILDMEKDDRGDVLYYVHYNGWNHRHDEWIREEVIFDVVGPSTSKRK
NPNPPTSLSKITKDPPHRFKAKLESESKTSSSSSSNTTSTPSVSTTATVT
STSATTLGKTPTEKDSSPKNKSPKTTAPAIATSSTTAVQSTTTSTTSSSR
SPVSSSPKTSPLVSTTQTTTITVTTKKVTSSQIQTPVPVTSPKAESETPS
KDSKESPSQLSKQSPASAKQAPASAKQTPVSAKQTPVSSKQTPASTKQTP
VSAKQTASTKQTPTPKSQAITPATKQTPILSKQTPTQNKQQTPAQVNKAT
PVSSKPPLASKLISLSGKQPSPATNKESPTTSKTLSVLSSKASLESKSTA
IVNKLTTSSAPLKLSSLQTKQTPLSSKPLKIPPSEPLTIKCGKGYGANQQ
EKLPSPLKSPAIPPDAVFLSEPSQHAKGAHHKHAHHRPKPVNDVLFIPDI
KPSPVKPRLTRNSMQDTFLLNALEQSIGGQTSTVSQDVAMKSEPPVLSRR
RSNRQNPSPKSNEQHTDSDISSKEESKESAGVEKDVPEKRISRADRKNAE
LDSAAAGLLSLDSKDTLMSMSKDEKVKNWIEDSKNVLSTVTGKTEEVDEE
EIKSEQTSKAAETSSVASTAVTAATPHEEKTWRRGRRPKSKRANNESKKK
KEESDSDTEMKSEGDEQTNPATGQIENNNVITEKDRTSETVDALSAFCSI
VENAQKLQSHPSVESTASTLESAGDTSPTKDHPGVSGHHLTEKKKRSHKR
KRTQSTTEGGTGDDALKSPKEKREKQMSPPLEYNSDFVSDLADVLSEKSS
VDRIAIMQSRLNQMRKLYCKLRQEVASIDRRKRRKLRKQNAKS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 474..494 |
| None | No IPR available | SMART | SM01014 | ARID_2 | coord: 284..375
e-value: 1.3E-22
score: 91.1 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 517..605
e-value: 3.5E-15
score: 55.2 |
| None | No IPR available | GENE3D | 1.10.150.60 | | coord: 261..399
e-value: 2.8E-25
score: 88.0 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 9..53
e-value: 2.4E-6
score: 26.7 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 54..113
e-value: 1.5E-9
score: 36.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 142..161 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 499..522 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 375..485 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1256..1334 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 917..1012 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 594..893 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1029..1240 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 62..105
e-value: 8.70831E-4
score: 37.9628 |
| None | No IPR available | CDD | cd00024 | CHROMO | coord: 553..588
e-value: 2.23587E-8
score: 51.4959 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 58..112 |
| IPR001606 | ARID DNA-binding domain | SMART | SM00501 | bright_3 | coord: 288..380
e-value: 1.7E-16
score: 70.8 |
| IPR001606 | ARID DNA-binding domain | PFAM | PF01388 | ARID | coord: 290..375
e-value: 2.2E-17
score: 63.4 |
| IPR001606 | ARID DNA-binding domain | PROSITE | PS51011 | ARID | coord: 287..379
score: 24.997 |
| IPR001606 | ARID DNA-binding domain | SUPERFAMILY | 46774 | ARID-like | coord: 287..385 |
| IPR000953 | Chromo/chromo shadow domain | SMART | SM00298 | chromo_7 | coord: 550..601
e-value: 5.7E-6
score: 35.8 |
| IPR002999 | Tudor domain | SMART | SM00333 | TUDOR_7 | coord: 57..113
e-value: 7.3E-5
score: 32.2 |
| IPR012603 | RBB1NT | PFAM | PF08169 | RBB1NT | coord: 166..261
e-value: 2.0E-14
score: 53.5 |
| IPR025995 | RNA binding activity-knot of a chromodomain | PFAM | PF11717 | Tudor-knot | coord: 534..588
e-value: 1.8E-11
score: 43.6 |
| IPR016197 | Chromo domain-like | SUPERFAMILY | 54160 | Chromo domain-like | coord: 530..602 |
Blast
BLAST of TCONS_00011437-protein vs. Swiss-Prot (Human)
Match: ARI4B (AT-rich interactive domain-containing protein 4B OS=Homo sapiens GN=ARID4B PE=1 SV=2) HSP 1 Score: 256.144 bits (653), Expect = 3.035e-69 Identity = 157/405 (38.77%), Postives = 230/405 (56.79%), Query Frame = 0
Query: 2 ASDVPAFLEVGTPVSAKFKGAFCEATIKSVKKLVKFKVQYKDGTGSSVVQDDTIEGEYKLGSLVLVKQDDGEKKPATIQKMNDHSYYTVVFDDGDERTLKRTNVVVMGERHFLEHENLDNLPLTDPENFLSPVVLSSEKRRKRRRS-----AANLEEEDSDSDNKRELHKEFLGKVVCIE---VGDRKRSWFPALGVKHHGSHS----ESQVFVQSFKDGKRTLVNRDDVKEFSKTRDPLQSFLKGESRPDPVLKSAVEKAVAYKDMGELPKGWNI-----------------LDTIDEKEESSDEDLPSTPVLSAEDKSFHETLYSFLSKQGTNISKPPFVNNQGVNLHKFYKLVQEEYGGMDDI-TNQQWRSIYKQLGLRNIHTTASFNMKNLYKKYLQPWEE 376
A D P +L VGT VSAK++GAFCEA IK+ K+LVK KV ++ + + VQDD I+G K+G++V VK DG + A I K+ D S+YTVVFDDGDE+TL+R+++ + GERHF E E LD LPLT+PE+F +PV+ +K + RRS + + ++ R+ E LGKVVC++ + +K WFPAL V S + + V+SFKDGK T V R DV E + P +PD VLK A E+A+ + +P W D EKE++S E+ E ++F + LY F+ +GT I+K P + + +NL K ++LV + GG D+I + W+ +Y+ LG+ +++ A +N+K YKKYL +EE
Sbjct: 3 ALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPLKVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETLDQLPLTNPEHFGTPVI--GKKTNRGRRSNHIPEEESSSSSSDEDEDDRKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDTAP---------KPDAVLKQAFEQALEFHKSRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVH-KLGGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFEE 395
The following BLAST results are available for this feature:
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