TCONS_00011467-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011467-protein
Unique Name	TCONS_00011467-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	297

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011467-protein ID=TCONS_00011467-protein|Name=TCONS_00011467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MDKTINSQSSTTSDTATAMNTMLFVQGQEFAVVGTLLILMKIIAEYCQCI
DDVPMLVTDVMTRLCELLKIFNSRACQLVLGAGALQTVGLKTITAKHLML
VAQCLQVVILNINTIKNHFELRLTPKQYVMLTQFDQILKDYNNHRHELLC
KITNLMEEIFNSYLSQYELKPPMPSKTMRNIVAQVKKLRETMAAILSEQQ
LEVLFRDVRRKFKDCLASKLADFGVSNDGGPQHGLVTSDVIFYSTSLNKL
TGFKDLDHKCDGLWNSINELKKTRKKHEQHSSKSQQRASSAKTKSNR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006425	XLOC_006425	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011467	TCONS_00011467	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012501	Vps54_C

Vocabulary: **Biological Process**
Term	Definition
GO:0042147	retrograde transport, endosome to Golgi

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042147	retrograde transport, endosome to Golgi

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 138..158
None	No IPR available	COILS	Coil	Coil	coord: 267..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..297
IPR012501	Vps54-likeVacuolar protein sorting-associated protein 54, C-terminal	PFAM	PF07928	Vps54	coord: 28..158 e-value: 2.3E-44 score: 151.0

Blast

[Close]

BLAST of TCONS_00011467-protein vs. Swiss-Prot (Human)
Match: VPS54 (Vacuolar protein sorting-associated protein 54 OS=Homo sapiens GN=VPS54 PE=1 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 2.501e-83
Identity = 125/243 (51.44%), Postives = 175/243 (72.02%), Query Frame = 0

Query:   22 MLFVQGQEFAVVGTLLILMKIIAEYCQCIDDVPMLVTDVMTRLCELLKIFNSRACQLVLGAGALQTVGLKTITAKHLMLVAQCLQVVILNINTIKNHFELRLTPKQYVMLTQFDQILKDYNNHRHELLCKITNLMEEIFNSYLSQYELKPPMPSKTMRNIVAQVKKLRETMAAILSEQQLEVLFRDVRRKFKDCLASKLADFGVSNDGGPQHGLVTSDVIFYSTSLNKLTGFKDLDHKCDGLW 264
            +L V+GQ++AVVGT+L+L++II EYCQC+D++P + TD++TRL +LLK FNSR+CQLVLGAGALQ VGLKTIT K+L L ++CLQ+++  I  I+ HFE RL PKQY ML  FD I KDY++H  E+  K+  +M+ +F+  LS+YE+K P+PS   RNI  Q+ K+ E +  +L E+Q ++LF  +   +K  L  +L+   V NDGGPQ+GLVT+DV FY+ +L  L G KDLD     +W
Sbjct:  731 VLIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSMLRHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIW 973

The following BLAST results are available for this feature:

BLAST of TCONS_00011467-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011467-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VPS54	2.501e-83	51.44	Vacuolar protein sorting-associated protein 54 OS=...	[more]

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TCONS_00011467-protein (polypeptide) - C. hemisphaerica