TCONS_00011479-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011479-protein
Unique NameTCONS_00011479-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011479-protein ID=TCONS_00011479-protein|Name=TCONS_00011479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp
FQRADMKFIQYLVLVFCMCYTTTFDLTGKTVQLDVQDGKEGIVGNDFITS
FFTDSPHSFMRVQFFFKEPLHPINVFRLETTNTDGEPVSLSLKILDDLVV
LEARASSTKTSNQILGTLKQNSIQNLTIHFFNDRISLYNFCDLLSTKKLD
RNFLDVLKDMRYVLKTFYGQTNPEHRSYGEISRFDLSTSLMDEIVYQHHC
YKQKTVKTDGYRKPQAIGEHAASFTSDFESSSHSEENAPAEKEEGRILTP
LDKLNQALELLKEVKVNQGLQVSSIKLMKNTVKEIEQGNFGEGNRENGPL
QQLIRNSLRFGRRNACSSNPCYYLVPCFKTNDEAGYQCGKCPLGMEGDGK
TCRDINECSLNPCSPLTTCQNRNPGYTCTQCPPGFQGNAIFGRGNDFAKN
NKQTCVDVDECTQTPSVCPKHTFCNNTYGGYFCTSCESGYAFNKFGKCAQ
IRECQGEPRSAQNPCSEHATCSYELNDLKGGDIKACQCNFGYAGNGFECG
KDSDFDGFPDEDLNCDPKIASCIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006432XLOC_006432Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011479TCONS_00011479Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR018097EGF_Ca-bd_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 357..406
e-value: 1.8E-4
score: 30.9
coord: 410..449
e-value: 21.0
score: 12.2
coord: 453..500
e-value: 32.0
score: 10.1
coord: 315..353
e-value: 5.1
score: 16.1
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 354..388
score: 10.109
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 450..498
score: 8.928
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 312..353
e-value: 0.7
score: 3.0
coord: 407..455
e-value: 4.5E-5
score: 32.9
coord: 354..406
e-value: 5.6E-8
score: 42.5
IPR001881EGF-like calcium-binding domainPFAMPF07645EGF_CAcoord: 354..388
e-value: 8.9E-5
score: 22.5
coord: 407..443
e-value: 3.8E-9
score: 36.5
NoneNo IPR availableGENE3D2.10.25.10coord: 430..464
e-value: 1.4E-6
score: 28.1
NoneNo IPR availableGENE3D2.10.25.10coord: 337..354
e-value: 1.5E-4
score: 21.1
NoneNo IPR availableGENE3D2.10.25.10coord: 355..376
e-value: 5.4E-11
score: 41.7
coord: 306..336
e-value: 0.29
score: 10.5
NoneNo IPR availableGENE3D2.40.155.10coord: 377..410
e-value: 3.9E-9
score: 35.9
NoneNo IPR availableGENE3D2.10.25.10coord: 411..429
e-value: 8.8E-6
score: 25.1
NoneNo IPR availableGENE3D2.10.25.10coord: 465..504
e-value: 4.3E-4
score: 19.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..244
NoneNo IPR availableCDDcd00054EGF_CAcoord: 354..387
e-value: 8.39205E-6
score: 42.2386
NoneNo IPR availableCDDcd00054EGF_CAcoord: 407..440
e-value: 0.00155724
score: 35.6902
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 400..446
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 347..386
IPR018097EGF-like calcium-binding, conserved sitePROSITEPS01187EGF_CAcoord: 407..433

Blast
[Close]
BLAST of TCONS_00011479-protein vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.195e-47
Identity = 99/271 (36.53%), Postives = 143/271 (52.77%), Query Frame = 0 
Query:  247 ILTPLDKLNQALELLKEVKVNQGLQVSSIKLMKNTVKEIEQGNFGEGNRENGPLQQLIRNSLRFGRRNACSSNPCYYLVPCFKTNDEAGYQCGKCPLGMEGDGKTCRDINECS-LNPCSPLTTCQNRNPGYTCTQCPPGFQGNAIFGRGNDFAKNNKQTCVDVDECTQ-TPSVCPKHTFCNNTYGGYFCTSCESGYAFNKFGKCAQIRECQGEPRSAQNPCSEHATCSYELNDLKGGDIKACQCNFGYAGNGFECGKDSDFDGFPDEDLNC 515
            ++T L   NQ   +L E++ +   QV  + L++NT+ E +   F E                   +R+ CS NPC+  V C +  +  GY+CG CP G++G+G  C DINEC+  +PC P ++C N  PG+ C  CP G++G  + G G D+A+ +KQ C D+DEC       C  ++ C NT G + C  C  G+  N+   C   R C      A +PC  HA C +E N        +CQCN G+AGNG  CG D+D DG+PD+ L C
Sbjct:  231 LVTQLTLFNQ---ILVELRDDIRDQVKEMSLIRNTIMECQVCGFHE-------------------QRSHCSPNPCFRGVDCMEVYEYPGYRCGPCPPGLQGNGTHCSDINECAHADPCFPGSSCINTMPGFHCEACPRGYKGTQVSGVGIDYARASKQVCNDIDECNDGNNGGCDPNSICTNTVGSFKCGPCRLGFLGNQSQGCLPARTCH---SPAHSPCHIHAHCLFERN-----GAVSCQCNVGWAGNGNVCGTDTDIDGYPDQALPC 471
The following BLAST results are available for this feature:
BLAST of TCONS_00011479-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP34.195e-4736.53Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=... [more]
back to top