TCONS_00011554-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011554-protein
Unique NameTCONS_00011554-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011554-protein ID=TCONS_00011554-protein|Name=TCONS_00011554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MDNQQNNTVSRKRRDLTFVMAPKRRARRSTSNGVYKNMVTGAGKKSSKAR
RLAKKRAPGGKRVYYVSPKALLPGGAVVSCFDRWEHRTQSELRGFPFVGR
MLTYAGSGYHANLGYNEETAWTVIADLHSHNWFDEQTRAIFIEFTVYNPN
VNLFATAFLFTEMTPTGGSLPWADFKIFNGYRYSVNVNAMSRVAELIFVG
FVIYYTVKEIRKLLKQKWQYFHSFFNIIEILLIPLYCAMFCLLLVRWLTT
ARNIKMFKENPKDFVSFQYAATADEVLQAVIGLVAFLLNIKFLRLFQFAK
TFFSIGLIMKTFVHPLLMFMVPXSSVLASS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006475XLOC_006475Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011554TCONS_00011554Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013122PKD1_2_channel
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013122Polycystin cation channel, PKD1/PKD2PFAMPF08016PKD_channelcoord: 84..319
e-value: 1.8E-51
score: 175.1
NoneNo IPR availableGENE3D1.20.120.350coord: 5..302
e-value: 2.5E-4
score: 19.8

Blast
[Close]
BLAST of TCONS_00011554-protein vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 2.615e-28
Identity = 61/218 (27.98%), Postives = 111/218 (50.92%), Query Frame = 0 
Query:   81 FDRWEHRTQSELRGFPFVGRMLTYAGSGYHANLGYNEETAWTVIADLHSHNWFDEQTRAIFIEFTVYNPNVNLFATAFLFTEMTPTGGSLPWADFKIFNGYRYSVNVNAMSRVAELIFVGFVIYYTVKEIRKLLKQKWQYFHSFFNIIEILLIPLYCAMFCLLLVRWLTTARNIKMFKENPKDFVSFQYAATADEVLQAVIGLVAFLLNIKFLRLFQF 298
               W++++Q + +G+P  G++  Y G GY   LG + +    ++  L  + W D  TRA+F+E TVYN NVNLF    L  E +  G     A  +    Y ++   +     AELI+  F++YY V + +++ K+ W YF S +N++E+ +I    +   + + R +   R+++  + + ++ +SF   A AD  L  +I  +  L  +K   L + 
Sbjct: 2076 LSEWQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRL 2293
The following BLAST results are available for this feature:
BLAST of TCONS_00011554-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK1L22.615e-2827.98Polycystic kidney disease protein 1-like 2 OS=Homo... [more]
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