TCONS_00011734-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011734-protein
Unique NameTCONS_00011734-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1206

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011734-protein ID=TCONS_00011734-protein|Name=TCONS_00011734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1206bp
MDELERLESLSLVSKVCTELENHLGMNDKTLAEFVIMLAGKSSSTEKFEK
YLKKNGAEFPDSLVSNLFRLIKTMQPDTKKKKKNKKQKEEDKFDETFNPE
LEERKQKYPGLSIPDRAPVTLNDDIDDADDDDNKEDQAVAMSALSELEAL
MPKAIEKGESSKEVNREIENLRGRRNRSRSGSPDRRRRRSRDRSRESRRR
RSRSRDRSGDRRRRRSRSRSRSSSPRRRDRGKQRRENFQSETAEVGQIYD
GKVTNIMQFGCFVQIFGIRQRQEGLVHVSQLRREGRVNDVKDVVTKNQNV
KVKVLNIVGKKTSLSMKDVDQITGEDLNPNSGVRLPTSRSQNEEDLLRNP
DRPSNVKPVIPMYEEEGTNVKKKFKRVSSPEKWEIKQLISAGVLDKADYP
DFDEETGILPKDDDSDEEIEIELKEEEPPFLQGQTKLSVNVSPIKIVKNP
DGTLPRAAMMQTALSKERREVKQQQREAQADTIPKDIGKMWIDPVPDVLD
GDNKPYFAQDMKGAAMQTQDVPEWKKATFGGKGGSYGKKTSLTILEQRQS
LPIYKLKDQLVKAVMDNQILIVIGETGSGKTTQITQYLAEEGFTATGKIG
CTQPRRVAAMSVAKRVAEEYGCRLGQEVGFTIRFEDCTTPETRIKYMTDG
MLLRECLIDSELSPYSLIMLDEAHERTVSTDVMFGLLKKAVLKRKDLKLI
VTSATLDAVKFSTYFFEAPIFTIPGRTFPVEILYTKEAEADYLDAALITV
MQIHLTEPPGDVLVFLTGQEEIDTACEILFERMKSLGSDVPDLIILPVYS
ALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQNV
YNSKTCIDQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLS
TNVPEIQRTNLAQTILELKAMGVNDLISFDFMDPPPMETLTTAMENLHSL
SALDDEGLLTRLGRRMAEFPLSPQLAKMLIQSVHLSSAEEVLTVVSMLSV
QNVFYRPKEKQAVADQKKAKFHQVEGDHLTLLAVYNAWKNSKFSNAWCFE
NFVQARSLKRAQDVRKQLLGIMDRHKLDVVSCGKNIVRCQKAIVSGYFRN
AAKKDPQEGYKTQVDNQSVYIHPSSSLFNRQPEWVVYHELVLTTKEYMRE
VIAIDPKWLVEFSPAFYKFSDKNKLSKRKKEQRIEPLYNRYEEPNAWRIS
RAYRRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006596XLOC_006596Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011734TCONS_00011734Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR007502Helicase-assoc_dom
IPR022967S1_dom
IPR003029S1_domain
IPR011709DUF1605
IPR002464DNA/RNA_helicase_DEAH_CS
IPR027417P-loop_NTPase
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 457..477
NoneNo IPR availableGENE3D1.20.1390.10coord: 3..98
e-value: 0.0019
score: 17.5
NoneNo IPR availableGENE3D2.40.50.140coord: 235..323
e-value: 9.9E-17
score: 60.4
NoneNo IPR availableGENE3D3.40.50.300coord: 550..709
e-value: 3.8E-30
score: 104.3
NoneNo IPR availableGENE3D3.40.50.300coord: 727..902
e-value: 9.5E-54
score: 181.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 322..358
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..133
NoneNo IPR availableCDDcd00046DEXDccoord: 568..706
e-value: 5.31863E-29
score: 113.972
NoneNo IPR availableCDDcd05684S1_DHX8_helicasecoord: 246..324
e-value: 9.79614E-40
score: 142.378
NoneNo IPR availableCDDcd00079HELICccoord: 731..888
e-value: 3.26847E-14
score: 70.3444
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 549..733
e-value: 1.4E-30
score: 117.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 561..724
score: 18.167
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 777..881
e-value: 7.6E-19
score: 78.6
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 751..881
e-value: 4.0E-13
score: 49.6
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 742..922
score: 17.938
IPR007502Helicase-associated domainSMARTSM00847ha2_5coord: 942..1032
e-value: 1.7E-35
score: 133.9
IPR007502Helicase-associated domainPFAMPF04408HA2coord: 943..1031
e-value: 3.5E-23
score: 81.8
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 244..317
e-value: 8.9E-16
score: 68.4
IPR003029S1 domainPFAMPF00575S1coord: 244..312
e-value: 3.7E-13
score: 49.5
IPR003029S1 domainPROSITEPS50126S1coord: 246..317
score: 16.376
IPR011709Domain of unknown function DUF1605PFAMPF07717OB_NTP_bindcoord: 1090..1165
e-value: 4.5E-23
score: 81.3
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 666..675
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 547..1093
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 241..319

Blast
[Close]
BLAST of TCONS_00011734-protein vs. Swiss-Prot (Human)
Match: DHX8 (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 1564.28 bits (4049), Expect = 0.000e+0
Identity = 758/1005 (75.42%), Postives = 863/1005 (85.87%), Query Frame = 0 
Query:  203 RSRDRSGDRRRRRSRSRSRSSSPRRRDRGKQRRENFQSETAEVGQIYDGKVTNIMQFGCFVQIFGIRQRQEGLVHVSQLRREGRVNDVKDVVTKNQNVKVKVLNIVGKKTSLSMKDVDQITGEDLNPNSGVRLPTSRSQNEEDLLRNPDRPSNVKPVIPMYEEEGTNVKKKFKRVSSPEKWEIKQLISAGVLDKADYPDFDEETGILPK-DDDSDEEIEIELKEEEPPFLQGQTKLSVNVSPIKIVKNPDGTLPRAAMMQTALSKERREVKQQQREAQADTIPKDIGKMWIDPVPDVLDGDNKPYFAQDMKGAAMQTQDVPEWKKATFGGKGGSYGKKTSLTILEQRQSLPIYKLKDQLVKAVMDNQILIVIGETGSGKTTQITQYLAEEGFTATGKIGCTQPRRVAAMSVAKRVAEEYGCRLGQEVGFTIRFEDCTTPETRIKYMTDGMLLRECLIDSELSPYSLIMLDEAHERTVSTDVMFGLLKKAVLKRKDLKLIVTSATLDAVKFSTYFFEAPIFTIPGRTFPVEILYTKEAEADYLDAALITVMQIHLTEPPGDVLVFLTGQEEIDTACEILFERMKSLGSDVPDLIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQNVYNSKTCIDQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLSTNVPEIQRTNLAQTILELKAMGVNDLISFDFMDPPPMETLTTAMENLHSLSALDDEGLLTRLGRRMAEFPLSPQLAKMLIQSVHLSSAEEVLTVVSMLSVQNVFYRPKEKQAVADQKKAKFHQVEGDHLTLLAVYNAWKNSKFSNAWCFENFVQARSLKRAQDVRKQLLGIMDRHKLDVVSCGKNIVRCQKAIVSGYFRNAAKKDPQEGYKTQVDNQSVYIHPSSSLFNRQPEWVVYHELVLTTKEYMREVIAIDPKWLVEFSPAFYKFSDKNKLSKRKKEQRIEPLYNRYEEPNAWRISRAYRRR 1206
            + RD+ G+R   R R +     P               E   +G IY+GKVT+IMQFGCFVQ+ G+R+R EGLVH+S+LRREGRV +V DVV+K Q VKVKVL+  G KTSLSMKDVDQ TGEDLNPN   R       NEE  +RNPDRP+++  V     E+ +  +K+  R+S PEKWEIKQ+I+A VL K ++PDFDEETGILPK DD+ DE++EIEL EEEPPFL+G TK S+++SPIKIVKNPDG+L +AAMMQ+AL+KERRE+KQ QREA+ D+IP  + K W+DP+PD  +G      A +M+G  M   D+PEWKK  FGG   SYGKKT ++ILEQR+SLPIYKLK+QLV+AV DNQILIVIGETGSGKTTQITQYLAE G+T+ GKIGCTQPRRVAAMSVAKRV+EE+GC LGQEVG+TIRFEDCT+PET IKYMTDGMLLRECLID +L+ Y++IMLDEAHERT+ TDV+FGLLKK V KR+D+KLIVTSATLDAVKFS YF+EAPIFTIPGRT+PVEILYTKE E DYLDA+LITVMQIHLTEPPGD+LVFLTGQEEIDTACEIL+ERMKSLG DVP+LIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQ VYNSKT IDQLVVTPISQAQAKQR+GRAGRTGPGKCYRLYTERAYRDEML+TNVPEIQRTNLA T+L LKAMG+NDL+SFDFMD PPMETL TAME L++L ALDDEGLLTRLGRRMAEFPL P L KMLI SVHL  +EE+LT+VSMLSVQNVFYRPK+KQA+ADQKKAKFHQ EGDHLTLLAVYN+WKN+KFSN WC+ENF+QARSL+RAQD+RKQ+LGIMDRHKLDVVSCGK+ VR QKAI SG+FRNAAKKDPQEGY+T +D Q VYIHPSS+LFNRQPEWVVYHELVLTTKEYMREV  IDP+WLVEF+PAF+K SD  KLSK+KK+QR+EPLYNRYEEPNAWRISRA+RRR
Sbjct:  236 KDRDKYGERNLDRWRDKHVDRPP--------------PEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLNPNR--RRNLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDA-EGRQ---IAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR 1220
The following BLAST results are available for this feature:
BLAST of TCONS_00011734-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX80.000e+075.42ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
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