TCONS_00011789-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011789-protein
Unique NameTCONS_00011789-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011789-protein ID=TCONS_00011789-protein|Name=TCONS_00011789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MPRSFLVKSNLKTEQHFHARSLYEQKNRLDDSDHFQHVQTFEPRAHHSPD
DILYQGKRSPTYVEINDYWHHGKFPFYGKHISRFYTPPEKDINFNTISPP
LEKPLIKEETRPAHVESHLYERKLVERHTNEIVVVHPSDHHIQHHPTVDL
KVNSELEDKKSPPRQQTVSKTDKNSKSPRRFSCKYCEKDYMSLGALKMHI
RTHTLPCKCNICGKAFSRPWLLQGHIRTHTGERPFGCSYCGRAFADRSNL
RAHIQTHTQVKKYECRFCSKTFSRASLLKKHEANDCLANIGRPET
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006612XLOC_006612Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011789TCONS_00011789Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 207..229
e-value: 0.0044
score: 26.2
coord: 263..283
e-value: 17.0
score: 11.3
coord: 235..257
e-value: 0.0011
score: 28.2
coord: 181..203
e-value: 0.0067
score: 25.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 237..257
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 207..229
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 183..203
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 207..234
score: 14.981
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 181..204
score: 10.242
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 263..293
score: 9.889
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 235..262
score: 13.63
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 248..282
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 179..218
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 206..257
NoneNo IPR availableGENE3D3.30.160.60coord: 215..229
e-value: 3.0E-12
score: 45.9
NoneNo IPR availableGENE3D3.30.160.60coord: 230..247
e-value: 1.0E-15
score: 57.0
NoneNo IPR availableGENE3D3.30.160.60coord: 193..214
e-value: 5.5E-14
score: 51.8
coord: 248..284
e-value: 2.9E-16
score: 59.1
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 263..281
e-value: 3.2E-4
score: 20.9
coord: 208..229
e-value: 4.2E-6
score: 26.8
coord: 237..257
e-value: 4.4E-6
score: 26.8
coord: 181..203
e-value: 0.0023
score: 18.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..179
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 23..192
e-value: 1.7E-4
score: 21.3

Blast
[Close]
BLAST of TCONS_00011789-protein vs. Swiss-Prot (Human)
Match: SNAI2 (Zinc finger protein SNAI2 OS=Homo sapiens GN=SNAI2 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.734e-60
Identity = 86/113 (76.11%), Postives = 100/113 (88.50%), Query Frame = 0 
Query:  174 NSKSPRRFSCKYCEKDYMSLGALKMHIRTHTLPCKCNICGKAFSRPWLLQGHIRTHTGERPFGCSYCGRAFADRSNLRAHIQTHTQVKKYECRFCSKTFSRASLLKKHEANDC 286
            +++S + FSCKYC+K+Y+SLGALKMHIRTHTLPC C ICGKAFSRPWLLQGHIRTHTGE+PF C +C RAFADRSNLRAH+QTH+ VKKY+C+ CSKTFSR SLL KHE + C
Sbjct:  152 DAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGC 264
The following BLAST results are available for this feature:
BLAST of TCONS_00011789-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNAI25.734e-6076.11Zinc finger protein SNAI2 OS=Homo sapiens GN=SNAI2... [more]
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