TCONS_00011862-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011862-protein
Unique Name	TCONS_00011862-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	291

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011862-protein ID=TCONS_00011862-protein|Name=TCONS_00011862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MRSERRLSERSRSNSKTTNNVKSQERRTLSRSIDGCTICQVKSARHAFVD
SNKWKKYFKDVFGISENRSSEICHLCLKALKRWRRAPKTGKPDFHNIVDS
KFVQASIRRNSVKKRRSSMVEMEVCSKEDNKVALMEEDDLLSADDSTDDA
IDSDGVPDTYFDSPSPDDEDEEDNQNGLVLSNGSTELKKITSDVACQTSF
LYPSLTSPQANSDSFKLPYIDLSKWRQEEICCGVIFKGPSGEVLVDPKWL
NPSCNMCNRSATTPNKSPGEGKVSEINMFDEKLVNLIQSSS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006662	XLOC_006662	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011862	TCONS_00011862	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR026065	FAM60A

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026065	FAM60A	PFAM	PF15396	FAM60A	coord: 28..255 e-value: 5.3E-34 score: 118.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..182

Blast

[Close]

BLAST of TCONS_00011862-protein vs. Swiss-Prot (Human)
Match: FA60A (Protein FAM60A OS=Homo sapiens GN=FAM60A PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.371e-25
Identity = 59/236 (25.00%), Postives = 118/236 (50.00%), Query Frame = 0

Query:   29 LSRSIDGCTICQVKSARHAFVDSNKWKKYFKDVFGISENRSSEICHLCLKALKRWRRAPKTGKPDFHNIVDSKFVQASIRRNSVKKRRSSMVEMEVCSKEDNKVALMEEDDLLSADDSTDDAIDSDGVPDTYFDSPSPDDEDEEDNQNGLVLSNGSTELKKITSDVACQTSFLYPSLTSPQANSDSFKLPYIDLSKWRQEEICCGVIFKGPSGEVLVDPKWLNPSCNMCNRSATTP 264
            + RSI+GC IC+ KS+   F DS +++K F+  FG+ E RS +IC+ C+  +KRW++ P   K +++++VD++    S++     K+  ++    +   + N+++ ++++      +S   +  S   P     + SP   ++ D+ +   +++GS      +                           ++DL+ W++++ICCG+I+KG  GEVL+D     P C+    +A  P
Sbjct:    9 MYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLVKRWKKLPAGSKKNWNHVVDAR-AGPSLKTTLKPKKVKTLSGNRI---KSNQISKLQKE--FKRHNSDAHSTTSSASP-----AQSPCYSNQSDDGSDTEMASGSNRTPVFS---------------------------FLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKP 206

The following BLAST results are available for this feature:

BLAST of TCONS_00011862-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011862-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FA60A	5.371e-25	25.00	Protein FAM60A OS=Homo sapiens GN=FAM60A PE=1 SV=1	[more]

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TCONS_00011862-protein (polypeptide) - C. hemisphaerica