TCONS_00012265-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012265-protein
Unique NameTCONS_00012265-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2039

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012265-protein ID=TCONS_00012265-protein|Name=TCONS_00012265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2039bp
GQCWSLSSNDRFLEVSPTLNCCENNKTMIFERSNTKEKIFDTIGSVKTMN
DDGNYWINFDNNPSLATQMSLVQLSPGNNRVAIMDSGTPNLCLSHKEYSN
GVPKLTVASCNSTENLFQYEQCFNDKGDMLENYRGSLTWNHDYVLYVKRN
ELDPTYAPSSDVKCIINNADGDFVLTDRPDRQDCCHESNGHFTTETNSLS
SIKQPLENIKFYSGLDTSEFGTHQLISLKLYRNISSNGVQVRRHWKRWGM
PNTFKKTIKSLVFSKDNNTLYYHQETTHPTFTITQGMECIPNEAELHVSS
GWTYHPNTEYYYKYFDLSLNPLQANQYCQQYNAVLLNNDRFFTPLIFKRL
SRSLEVLASKSLASGCGFVKYNVDTQEKDCIAHHEMASTKLPFVCERKDI
EAFYSCKEEEGFVITNGTCRKYVDFPLNWHDARRHCRLYNADLPILREQC
NSNYSTTWLGVSRHNETYLQVELVTGEDPNIVLPFDVYFFKQNINGRMSV
FYYEDGNVLETDEIYNTTKPFYCERKIPDDIITSQKHVKTEAEEACNDMG
KDLYMSTLDRDVDQIKRMPGYSIVIKEYIVLNHNLDAVCITKNGGSSSCN
QAHAVCTNKRPTDEECTGVTADDQCYKIYESAHFEAAVDTCFQGMYFLYD
FDENDFEPIDLPYGTYWVEKNINGQCTYYDVATDSFTSTSACDNPTIVHK
FVCVKFFPDSILKPRMVPNYEQDANIPTDNLLTNFDYGYSYYSSNRKYYI
LPWYLNWKDALDMCIFKGYRIASNFEDQTEIDFVLDKTAGVKGFWMDYNS
NYHQNKWASGNNLNASTIIPSTAKGCGYFSHCCNMQFTDCQQKRMVVCKF
EPYIHHYVRPHYQTNYTINYQSSLLSRSHLSGLVTKPNFNGDSAYLTSPV
KATQEDAVRFCQRPSFSLQQFSASSCSYQMIPSFDQKTWLHFKQNISSVM
VDETGSLVADHRFNGNINEGDCAVALPGNREWGTMPCNEKLDFVCAAETT
FSASLSPQWYSEIYCGGCPWIKGNGYFACYHYLQAELNVTMAAKACELFG
ASIVNAQNMNDNLKKVAYKRVWNGISPDDPTRCLLSDSDNLTVSCNDKHP
SICGKNYATPSKEQLQFICEPPMVAHNDSCYYFDPSLSLPWHQAQSFCNG
LNAHLASINNDAEFEVLKNIPHDPDSSIIKIYIGSNVYGMYPVHIIAWVD
GTPLNETFFSTMQIGDNVQPIGRCLTSKTPPDERKFYIRECDDERPFLCK
RPFTEYVPTTTTTTPTTTTTTTTTTTTTPTTTLTPTTSPPDSPTTSPADT
QTTLPADTPTTLPDNTMTTSPADTPTTSPVDTSNTLPDNTMVTSPADTTA
TPPDATMATNITDTETNDTSTDNLTTPSEPDVTHVSGAMTTTDGFNEGYS
ETPVFTLNKDDWTTWTACNVLCGPGNRTRTKKEEIEVEMCTGSGLCDTKV
FANNSRSCSQFCQEEGDRICNAEMQVGGTMTLFTIHNIQCIHTHFIDETN
ENFPLIPFVDTLTKSCYMYESEMEFQVNCDAKPSIESQMRLCECKDKETS
AMMEWSPWSPCSATCNGTRKRDRQCMIGAKGGCSWLTKEVEPCNGLCPVH
GGLSQWSSWSACSTTCGGGQRQQNRTCDHPPPTNGGNPCVERTIKTEDCN
INRCPVHGGWTNWSGEEPCNKPCGTGSIIRRRYCTLPRPLYGGDVCIGSD
TLETPCNTHDCQPIDFQVKCEFDMQFNPNMEDIEHHSSIEFQDDIYEQAT
ELMNTQWNGTVAKVKIHSLEKGSIIANFTITFNSLESFQLLYLQDSIEED
NVIGKIPIVVGSNFSYSTVQVPTSSPTNIQVNSTSSSLIIDWDPVFLNDQ
NGVIRNYLVFIRQKLRLSDPYDVFAKPTTXGVIRNYLVFIRQKLRLSDPY
DVFATPTTSILIGGLKPLTDYVFRVLAYTDLGNGLATDLQVARTAEDVPY
LEPRSIKAETMSTTSIFVYWVNIDTSDNIYPIGYNIHYNEYTANVSFPLT
YIELVDLIPSTKYNITVCAFTNVGAGPCDSTVAYTLPAG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006905XLOC_006905Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012265TCONS_00012265Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR001304C-type_lectin-like
IPR000884TSP1_rpt
IPR016186C-type_lectin-like/link
IPR013783Ig-like_fold
IPR016187CTDL_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 1823..1934
e-value: 2.2E-5
score: 33.9
coord: 1950..2026
e-value: 0.0011
score: 28.3
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 1824..1934
e-value: 2.3E-7
score: 30.9
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1952..2039
score: 13.697
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1822..1947
score: 14.28
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1824..1944
e-value: 2.44019E-7
score: 49.8023
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1953..2035
e-value: 5.15073E-6
score: 45.5651
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1879..2036
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 735..849
e-value: 0.016
score: 23.9
coord: 406..524
e-value: 0.6
score: 5.6
coord: 1119..1250
e-value: 1.5E-19
score: 81.0
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 1139..1251
e-value: 2.5E-8
score: 34.5
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 743..849
score: 8.884
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 1126..1250
score: 12.813
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 1552..1598
e-value: 1.6E-7
score: 41.0
coord: 1409..1463
e-value: 0.21
score: 15.4
coord: 1603..1655
e-value: 5.4E-13
score: 59.2
coord: 1660..1712
e-value: 4.0E-7
score: 39.7
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1599..1654
e-value: 1.4E-13
score: 50.4
coord: 1656..1711
e-value: 1.1E-9
score: 38.0
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 1660..1711
e-value: 2.3E-5
score: 24.4
coord: 1604..1654
e-value: 1.4E-10
score: 41.1
coord: 1554..1594
e-value: 6.9E-4
score: 19.7
coord: 1411..1442
e-value: 0.01
score: 15.9
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1549..1598
score: 10.441
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1600..1655
score: 13.318
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1657..1712
score: 10.778
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1552..1594
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1654..1711
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1597..1654
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 1115..1266
e-value: 1.2E-18
score: 67.0
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 1012..1101
e-value: 0.079
score: 12.5
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 723..852
e-value: 1.2E-7
score: 31.3
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 885..1001
e-value: 3.6E-5
score: 23.4
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 396..530
e-value: 5.9E-6
score: 25.6
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 186..341
e-value: 0.0082
score: 15.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1946..2039
e-value: 6.4E-11
score: 41.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1811..1945
e-value: 1.1E-15
score: 57.3
NoneNo IPR availableGENE3D2.30.90.10coord: 1409..1474
e-value: 0.033
score: 14.3
coord: 1551..1596
e-value: 1.7E-7
score: 31.2
NoneNo IPR availableCDDcd00037CLECTcoord: 1129..1251
e-value: 4.06499E-12
score: 64.5633
NoneNo IPR availableCDDcd00037CLECTcoord: 419..467
e-value: 0.00996166
score: 35.6734
NoneNo IPR availableCDDcd00037CLECTcoord: 748..850
e-value: 3.84096E-6
score: 46.459
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 410..526
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 298..397
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 890..996
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 727..851
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 1011..1106
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 1116..1263

Blast
BLAST of TCONS_00012265-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.076e-34
Identity = 102/321 (31.78%), Postives = 142/321 (44.24%), Query Frame = 0
Query: 1412 WTTWTACNVLCGPGNRTRTKKEEIEVEMCTGSGLCDTKVFANNSRSCSQFCQEEGDRICNAEMQVGGTMTLFTIHNIQCIHTHFIDETNENFPLIPFVDTLTKSCYMYESEMEFQVNCDAKPSIESQMRLCECKDKET-----------SAMMEWSPWSPCSATCN-GTRKRDRQC--MIGAKGG--CSWLTKEVEPCNGL-CPVHGGLSQWSSWSACSTTCGGGQRQQNRTCDHPPPTNGGNPCVERTIKTEDCNINRCPVHGGWTNWSGEEPCNKPCGTGSIIRRRYCTLPRPLYGGDVCIGSDTLETPCNTHDCQPID 1715
            W+ W AC+V CG G + R++             LC+  + AN  + C Q    E     N    V G+ + +++   +C  T      N+         T T++C                PS++   R CE    E             A   W PW  CS +C  GT+ R R C     A GG  C     +++ CN   CP+HG  + W+SWSACS +CGGG RQ+ R C  P P  GG  C    ++++ CN + CP HG W+ WSG   C++ C  G + R R C  P P  GG  C G D+    CNT  C P+D
Sbjct: 4535 WSAWRACSVTCGKGIQKRSR-------------LCNQPLPANGGKPC-QGSDLEMRNCQNKPCPVDGSWSEWSLWE-EC--TRSCGRGNQ---------TRTRTCN--------------NPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC-PVD 4814          

HSP 2 Score: 139.428 bits (350), Expect = 1.692e-32
Identity = 97/318 (30.50%), Postives = 131/318 (41.19%), Query Frame = 0
Query: 1411 DWTTWTACNVLCGPGNRTRTKKEEIEVEMCTGSGLCDTKVFANNSRSCSQFCQEEGDRICNAEMQVGGTMTLFTIHNIQCIHTHFIDETNENFPLIPFVDTLTKSCYMYESEMEFQVN----------CDAKPSIESQMRLCECKDKETSAM-MEWSPWSPCSATCNG-TRKRDRQCM--IGAKGG--CSWLTKEVEPCNG-LCPVHGGLSQWSSWSACSTTCGGGQRQQNRTCDHPPPTNGGNPCVERTIKTEDCNINRCPVHGGWTNWSGEEPCNKPCGTGSIIRRRYCTLPRPLYGGDVCIGSDTLETPCNTHDC 1711
            +W+ W  C   CG GN+TRT                         R+C+    + G R C       G      + NI+    H      + +       T ++SC           N          CD     E+QM++C  ++         W+ WS CS +C G  R+R R C   +   GG  C     + + CN   CP HG  S WS W  CS TC GGQ ++ RTCD+PPP+NGG  C     + + CN + CPV G W +W     C+  CG G   R+R C  P P+ GG  C G  T  T CN   C
Sbjct: 4591 EWSLWEECTRSCGRGNQTRT-------------------------RTCNNPSVQHGGRPCE------GNAVEIIMCNIRPCPVHGAWSAWQPW------GTCSESCGKGTQTRARLCNNPPPAFGGSYCDGA---ETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868          

HSP 3 Score: 130.954 bits (328), Expect = 4.940e-30
Identity = 72/205 (35.12%), Postives = 103/205 (50.24%), Query Frame = 0
Query: 1515 SCYMYESEME--FQVNCDAKPSIESQMRLCECKDKETSAMMEWSPWSPCSATCN-GTRKRDRQC--MIGAKGG--CSWLTKEVEPC-NGLCPVHGGLSQWSSWSACSTTCGGGQRQQNRTCDHPPPTNGGNPCVERTIKTEDCNINRCPVHGGWTNWSGEEPCNKPCGTGSIIRRRYCTLPRPLYGGDVCIGSDTLETPCNTHDC 1711
            S Y+ +++ E   +  C A+  + S +       +      +WS W  CS TC  G +KR R C   + A GG  C     E+  C N  CPV G  S+WS W  C+ +CG G + + RTC++P   +GG PC    ++   CNI  CPVHG W+ W     C++ CG G+  R R C  P P +GG  C G++T    CN  +C
Sbjct: 4493 SLYIADAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697          

HSP 4 Score: 94.3597 bits (233), Expect = 6.599e-19
Identity = 46/107 (42.99%), Postives = 59/107 (55.14%), Query Frame = 0
Query: 1555 WSPWSPCSATCNGTR-KRDRQC--MIGAKGG--CSWLTKEVEPCN-GLCPVHGGLSQWSSWSACSTTCGGGQRQQNRTCDHPPPTNGGNPCVERTIKTEDCNINRCP 1655
            WS W  CS TCNG + +R R C     + GG  C     +++ CN  +CPV G    W SWS CS +CGGG++ + R CDHP P  GG PC   T +   CN+  CP
Sbjct: 4763 WSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          
The following BLAST results are available for this feature:
BLAST of TCONS_00012265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN17.076e-3431.78Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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