TCONS_00012786-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012786-protein
Unique NameTCONS_00012786-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1731

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012786-protein ID=TCONS_00012786-protein|Name=TCONS_00012786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1731bp
FSFFFQRKSMEVNTSEYTKFRFEKTVKAVVLCTMGSIPNDVAISEDLAEK
LNFNHIGTQQQILRKFYNDVVKFSKKIGAPLSPVTGKECQSLHILLTLMG
NENLNIGKICSGLLLDLVYQNVLSPAVLISSAMTLSALSKPIKNFIGEIL
MILLQEKNSMTTLTTLTRIFSNQAINTTAFFDEIQKFIIDTLEKSHSTRC
DVERVLNALQPFFVYVVSKPQHCMNFTLMLLQTESIIQLKRKSKPIVFKI
LLNCLNDKINCKVISTEYLKVTVHMAIWYLDQKIKGPELGEMLISVLLSM
LWNCVKTNQSNHLEQSLNLLKILIQSQPLPLHLKKNVIIACSLLLTDVFG
DDAKLSLLEIVLSVLPDLLQSDDLHHSQQCGLMLMLPLLQILSDNETKQP
KLKSLASNILINVENLASVEYSKVDLNTAEKAEKTNSEIMNIGAYTTTMM
STLLSCDSSALNWLTDVSESKEPLANNIIYIIVAILLKSHGNQTVVEKCL
DALNEQCKLNSVLVPYLFPLFMYCLNNKKFINMKIPILFTVPKLAVGKMT
ISPVLKLLTLISTNNELLPTSIRLMTSLWKRQRRIFPYLLQMLNKTISDT
PHSQIWFDLMLSKATSISEICQLKPEQYGQDLVVLLSNMMESLVQVEVSP
LQVEKMECVSSSLSLVIESLRLLCLAKVIDIQTIWKAIILKVQPKKNEMI
NRSLCSFSDAIAHIYGEIRIDFQCEVVEYLWFIAQSEGGTTSSFSYGALS
HFSPSLQKVKYLPKQIQELTCQQLLSMKEHKDDETFDPLLEACPGYGYVA
LLKTLEPTELPGFKKLLTKVLREEINTLPRGVGRRSLMKPTQSMTSFVPD
VLRHLYESSTRPGVLPGLAASLLSCYEPKIRGLDPNKPSPIHVKAIMERY
KQTLNSILQDYTINSNDWSHVINTSKLWTSFMNQVYQVFIEGRIADLDIQ
LEKGEITDKESFEEEVSVAKYWARDQIINQLKTAAKGTPKVQGNSIFALV
GLANAVSSMEDENVGKEESHQYVSMRHWMLKVFDTVLVVFDGNAKIHGKP
FQWCQQVSSDKSSASSFVSRCAAAISLSEMVRPLLALDAGRILQMINTLK
ERCPGQSKAGTSSVLHFYTGIGYGMLMSRLSQIQSAGVMATFPEFNMVEY
MKILKKAATQNGDEEYEKDGAIIGYFIALSSLVYENDKKTPDEEILAQFD
QLIKQVNNLQREELTALQAQCYCFGLSSLTVALERVGAIKTNKVFEIRAI
LQKHVELAPQASDLYLSLGWLNNHVLRKGDDASKKEVNQLLKTWEVSMSQ
KETPTLHRLGMVKGVLSTLGCLNIHCDGDFQSAPETSEMKSALKKVVKNL
ETSKDVLVSLISARLLGELHLATNASSKFTSQLPSSYMYIGEKSNLSALF
EILLKEESSDTNIFKTVLDVFVDTGCPKLPPVSWTPVMNRLHEPSMSEEV
RLAVVDFVLTYASSCVDLSLWLSSLIQPSAFNRLDYPIQSRIFDHVSRIL
HVLPNSKQKILLEEIPLVVLTKNKNNRSIMLESVLKSWLSVAEMKEPIQS
SFTHLNEGVRKMITSLEQLPQVWTETSQDLFARLLEKLSLDQNILLSKID
ENLKIEVMIRTLEYRDVIEMEYLVLIIQSIGEHSDLLANFLSRIASFKGS
EKKMATLHQLHAHMKQRLILDDDKETGTSVEKLIFKFVSYLCNDQSPDGI
DTTWLVHPIKSFNSEDNVIALRHLFMGIEIF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007176XLOC_007176Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012786TCONS_00012786Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR022542DUF3730
IPR021392Focadhesin
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1192..1212
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 45..1593
e-value: 1.0E-6
score: 27.6
IPR022542Domain of unknown function DUF3730PFAMPF12530DUF3730coord: 519..734
e-value: 9.6E-26
score: 90.7
IPR021392FocadhesinPFAMPF11229Focadhesincoord: 1251..1587
e-value: 5.4E-20
score: 71.1
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 459..661
coord: 124..423

Blast
[Close]
BLAST of TCONS_00012786-protein vs. Swiss-Prot (Human)
Match: FOCAD (Focadhesin OS=Homo sapiens GN=FOCAD PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 3.657e-91
Identity = 313/1221 (25.63%), Postives = 589/1221 (48.24%), Query Frame = 0 
Query:  313 LEQSLNLLKILIQSQPLPLHLKKNVIIACSLLLTDVFGDDAKLSLLEIVLSVLPDLLQSDDLHHSQQCGLMLMLPLLQILSDN--------ETKQPKLKSLASNILINVENLASVEYSKVDLNTAEKAEKTNSEIMNIGAYTTTMMSTLLSCDSSALNWLTDVSESKEPLANNI---IYIIVAILLKSHGNQTVVEKCLDALNEQCKLNSVLVPYLFPLFMYCLNNKKFINMKIPILFTVPKLAVGKMTISPVLKLLTLISTNNELLPTSIRLMTSLWKRQRRIFPYLLQMLNKTISDTPH----SQIWFDLMLSKATSISEICQLKPEQYGQDLVVLLSNMMESLVQVEVSPLQVEKMECVSSSLSLVIESLRLLCLAKVIDIQTIWKAIILKVQPKKNEMINRSLCSFSDAIAHIYGEIRI--DFQCEVVEYLWFIAQSEGGTTSSFSYGALSHFSPSLQKVKYLPKQIQELTCQQLLSMKEHKDDETFDPLLEACPGYGYVALLKTLEPTELPGFKKLLTKVLREEINTLPRGVGRRSLMKPTQS----MTSFVPDVLRHLYESSTRPGVLPGLAASLLSCYEPKIRGLDPNKPSPIHVKAIMERYKQTLNSILQDYTINSNDWSHVINTSKLWTSFMNQVYQVFIEGRIADLDIQLEKGEITDKESFEEEVSVAKYWARDQIINQL-KTAAKGTPKVQGNSIFALVGLANAVSSME-----DENVGKEESHQYVSMRHWMLKVFDTVLVVFDGNAKIHGKPFQWCQQVSSDKSSASSFVSRCAAAISLSEMVRPLLALDAGRILQMINTLKERCPGQSKAGTSSVLHFYTGIGYGMLMSRLSQIQSAGVMATFPEFNMVEYMKILKKAATQNGDEEYEKD-GAIIGYFIALSSLVYENDKKTPDEEILAQFDQLIKQVNNLQREELTALQAQCYCFGLSSLTVALERVGAIKTNKVFEIRAILQKHVELAPQASDLYLSLGWLNNHVLRKGDDASKKEVNQLLKTWEVSMSQKETPTLHRLGMVKGVLSTLGCLNIHCDGDF----QSAPETSEMKSALKKVVKNLETSKDV--LVSLIS--ARLLGELHLATNASSKFTSQLPSSYMYIGEKSNLSALFEILLK-----EESSDTNIFKTVLDVFVDTG-CPKLPPVSWTPVMNRLHEPSMSEEVRLAVVDFVLTYASSCVD----LSLWLS-SLIQPSAFNRLDY 1486
            LE S+ LLK     +  P+ L   VII  +LLL        K      +L++   LL   +     +  L+L++P+LQILS          + + P  + LA N+L  ++     E  + D              M    +T   +  +++  S+A +WL  V ES  P+   I    ++++A LL     Q +  + L    E  + +S  VP L P+ M+ L       +   IL+T+PKL V K+ I  +L+++ L+ T   L   ++RL+TSLW++Q R++P L + +   +SD P      ++ ++ +++KA SI +IC+ +P Q+G D++  +S ++    +    P Q       ++  +LV++ L  LC A+V+ I++ W A+  K+      +I ++L      +  +        +F+ +V+ +LW   Q++    ++ +Y +L++F+     + +LP++I+     ++   +E  DDE  + +  + PG  Y+ LL    P  LP  ++  T ++++E+  +PRG+   +L    +S      + +P+ +  +YE++ +PG+ PGLA  +L CY+  +      KP    + +    +KQT  +++ +  I  ++W   I   + W ++MN+ Y   ++GR+ +L++QL+ G+  + E  + + S A  W RD + +++ K AAK +P V+GN++ AL  LA  VS  E     D +   E    ++SM+ W+  V DT+LV+ D + +  G+   W    S    + +S ++R AAA +LS +V   +     ++ +++N L  R PG+  A  S  +  + G+  GM +SRL + + + +     E N++  MK L        D   E + G I+G  + L SL+  + +      + A   +L   V++   +  T  +   Y   LS +  +    G I+  +  ++   L+  VE + Q S   L+LG + + +   G   ++   ++LL  W   +  + TPT+  L  + G+++ +G      +GD       A +TS  +  L +V++ L     V  ++ L S    LLG LHL+T +SS+  + +P+ Y Y+ E S + A     +       ES   ++ K V+      G   + PPV+W  +++ L   +  EE++   ++ ++T A S  +    L LW++  LI   + N   Y
Sbjct:  293 LEHSVELLK-----EDFPVEL---VIIGIALLLLQTPASQQK-----PILNLALKLLSVTEDQKIPKSSLLLVMPILQILSSTALEDCISVDEEGPSRQQLALNLLEMIQQ----ECYRDDHQKLSYKLVCPVTSMYGTIFTAWRILEVMTDSSAASDWLASV-ESLLPITAVIPAPAFLLLAHLLVEDKGQNL-HQILKVTTELAQADSSQVPNLIPVLMFKLGRPLEPILYNDILYTLPKLGVHKVCIGQILRIIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFM--AVSDVPSLSVGKEVQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTK----PDQ-------ATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTTEYENFKVQVLSFLWTHTQNKDPIVANAAYRSLANFTAGEHTILHLPEKIRP----EIPIPEELDDDEDVEDVDLSVPGSCYLKLLSLTPPLVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGARSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVSMYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLSEWHRAIFLPQAWLAYMNRAYHAILQGRLGELELQLKHGK-EEPEEVQYKKSTAWLWVRDMLTDEITKAAAKESPVVKGNALLALSSLAVVVSRHEASLSSDSDGLLEVQPNFLSMKEWVSMVLDTLLVIVDSHYQPRGQLLSWFYYKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDISGQ--EMNLL-LMKSLDALENCCFDTSLEYNTGCILGVGLVL-SLMSHSSQMQSRVHVAALLRKLSAHVDDSGSQSRTFQEVLAYT--LSCVCTSAFSAGIIEATEAEDVMNKLRLLVENSQQTSGFALALGNIVHGLSVCGHGKAEDLGSKLLPAWIRIVLTEGTPTMLCLAALHGMVALVG-----SEGDVMQLKSEAIQTSHFQGRLNEVIRTLTQVISVSGVIGLQSNAVWLLGHLHLSTLSSSQSRASVPTDYSYLPESSFIGAAIGFFITGGKKGPESVPPSLLKVVMKPIATVGESYQYPPVNWAALLSPLMRLNFGEEIQQLCLEIMVTQAQSSQNAAALLGLWVTPPLIHSLSLNTKRY 1465
The following BLAST results are available for this feature:
BLAST of TCONS_00012786-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOCAD3.657e-9125.63Focadhesin OS=Homo sapiens GN=FOCAD PE=1 SV=1[more]
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