TCONS_00012834-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012834-protein
Unique NameTCONS_00012834-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012834-protein ID=TCONS_00012834-protein|Name=TCONS_00012834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MLYCYNKGCGKEFNENENCQESCQHHPGAPVFHDAYKGWSCCKKRSTDFT
EFLNIPGCSKGFHNPEKPKLPEKKVEPTPDISEVITDGLPKLMKQKDPDT
VLERPSDGTPSIKLNFNISQSLKTALQKLKEKLKQNSGEQDDNDDSIKVG
APCKHSGCEMKFLGEDRTHGECTYHPGYPVFHEGYVWG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007197XLOC_007197Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012834TCONS_00012834Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007051CHORD_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..139
NoneNo IPR availableGENE3D4.10.1130.10coord: 163..188
e-value: 3.7E-4
score: 20.3
coord: 13..140
e-value: 4.7E-20
score: 71.3
IPR007051CHORD domainPFAMPF04968CHORDcoord: 3..63
e-value: 5.7E-26
score: 90.9
coord: 152..185
e-value: 8.5E-9
score: 35.9
IPR007051CHORD domainPROSITEPS51401CHORDcoord: 4..63
score: 30.974

Blast
[Close]
BLAST of TCONS_00012834-protein vs. Swiss-Prot (Human)
Match: CHRD1 (Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.024e-50
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 0 
Query:    2 LYCYNKGCGKEFNENENCQESCQHHPGAPVFHDAYKGWSCCKKRSTDFTEFLNIPGCSKGFHNPEK---PKLPEKKVEPTPDISEVITDGLPKLMKQKDPDTVLERPSDGTPSIKLNFNISQSLKTALQKLKEKLKQNSGEQDDNDDSIKVGAPCKHSGCEMKFLGEDRTHGECTYHPGYPVFHEG 184
            L CYN+GCG+ F+   N  ++C +HPG PVFHDA KGWSCCK+R+TDF++FL+I GC+KG HN EK   P  PE K     ++ E+       +++   P   ++RPS   P   L   IS SLK AL KLK        ++++++D IK+G  CK+ GC   + G +     C YH G P+FHEG
Sbjct:    3 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEG 188
The following BLAST results are available for this feature:
BLAST of TCONS_00012834-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHRD11.024e-5043.01Cysteine and histidine-rich domain-containing prot... [more]
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