TCONS_00012875-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012875-protein
Unique NameTCONS_00012875-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012875-protein ID=TCONS_00012875-protein|Name=TCONS_00012875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MSSPELDRDRRSSSLNRNSGRYDGYNNNRQFSGRDRSNKGEVIARNFPFD
ATDREIKEEIFREIERFGNIIHVLVRGHDQNRKAYITFGEEDAARELKRF
CLERRMKISAFNRTLHFDFDGNDYRGGDFNRGGYQNRDNFQRNNFRNNDR
FNDRNDFNRGGRGNDFGKDRFNNDNHINPRATRTLFVGNLEPNITKEELM
RIFDKYGAIDDIDVKRPPNGIPPYAFIKYLELDAAACAKNQMFGGDIKGD
RHAFVEFESIDAASAAYTEMRGFPLGGPERKIKIDYAEIKRNDDRGGDRR
DFDNRNEDRDYNRGNRYGNENQSNYTTYRGRGGSNGNNYRDRDSEDRSDR
RRSRTRSRSPINGDRNESRGRNTPPGGASPQKTPIDNHPKSISEISKSSN
TEKPEKPVSNSVEPYDSSKPQESLVDIAKRFVVAWKGAFALKNSAFPVRM
HLIGGNPDIANFYLRGIGTGAGPAIKILNITQRLRLDQPKLDEVSRRVQQ
SGAGGHCMLLALPTGDEVELEVSYQRRPLKSLVTYFKKKEAAGVILMSSA
EGPEGKLEETGMLHAFPPCEFSQQQLLKAAPNAGADPLNEDHLVIVVVKG
TTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007221XLOC_007221Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012875TCONS_00012875Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR016194SPOC-like_C_dom
IPR012921SPOC_C
IPR010912SPOC_met
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 41..118
e-value: 0.13
score: 14.5
coord: 184..256
e-value: 5.3E-11
score: 52.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 185..249
e-value: 9.9E-11
score: 41.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 183..289
score: 15.067
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 38..133
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 180..282
IPR016194SPOC-like, C-terminal domainGENE3D2.40.290.10coord: 421..600
e-value: 4.1E-53
score: 179.0
IPR016194SPOC-like, C-terminal domainSUPERFAMILY100939SPOC domain-likecoord: 424..600
NoneNo IPR availableGENE3D3.30.70.330coord: 134..361
e-value: 1.9E-21
score: 75.9
NoneNo IPR availableGENE3D3.30.70.330coord: 25..125
e-value: 6.0E-5
score: 22.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..421
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..174
IPR012921Spen paralogue and orthologue SPOC, C-terminalPFAMPF07744SPOCcoord: 429..599
e-value: 1.6E-33
score: 115.7
IPR010912Spen paralogue/orthologue C-terminal, metazoaPROSITEPS50917SPOCcoord: 424..601
score: 42.767

Blast
[Close]
BLAST of TCONS_00012875-protein vs. Swiss-Prot (Human)
Match: RBM15 (Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.444e-35
Identity = 78/185 (42.16%), Postives = 111/185 (60.00%), Query Frame = 0 
Query:  424 LVDIAKRFVVAWKGAFALKNSAFPVRMHLIGGNPDIANFYLRGIGTGAGPAIKILNITQRLRLDQPKLDEVSRRVQQSGAGGHCMLLALP--------TGDEVELEVSYQRRPLKSLVTYFKKKEAAGVILMSSAEGPEGKLEETGMLHAFPPCEFSQQQLLKAAPNAGADPLNEDHLVIVVVKG 600
            +   + +  +AW+G   LKNS FP  MHL+ G+  +A+  L  +    G  +  L ITQRLRLDQPKLDEV+RR++ +G  G+ +LLA+P        +        +  +RPL++LV+Y K+K+AAGVI  S   G     E TG+LHAFPPCEFSQQ L   +P        ED+LV+++V+G
Sbjct:  777 VASASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLL--VEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVI--SLPVGGNKDKENTGVLHAFPPCEFSQQFL--DSPAKALAKSEEDYLVMIIVRG 955
The following BLAST results are available for this feature:
BLAST of TCONS_00012875-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM151.444e-3542.16Putative RNA-binding protein 15 OS=Homo sapiens GN... [more]
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