TCONS_00013012-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013012-protein
Unique Name	TCONS_00013012-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	461

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013012-protein ID=TCONS_00013012-protein|Name=TCONS_00013012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp
MQWFQGDVSEAIQKAISEQKMFIVFVRDDKEESQKMEELCNSDEVKNICT
DDLCVAINITVDSEAGQQFGAIYPIAFLPCTFFIENDGIPAAIFPTMEKD
KFVEKTEELMAVVRKLKIGESQKPASEAQQQDSPSETTSSDAVGNKEPTN
STSASEEELTKKEKADLLILKAKAKKAQKEKQEAREREQKRRDEGRELSH
ARRDLAERQAKQLADDLAKRREEERAARERVKQQIKQDREDKVARFEAEK
KAREETKQQKVAKKDAEKEAKAQAVKAARDAAARIQFRLPDGSTSYKQFP
SDAKFIVVVNHVTKELAPHIPIVRLTTVYPKHEYTQEDHSKSLRDLGLSP
NASVIVSHGRASSSSSSSLNPISILMTVLAPLLALIYWFFSLFKSTPTTT
TPNDAPSAQQQEPSSISTNDHRDASVRRRNLGGGSNIRRLYDDKPDDEDN
ATWNGNSTQQM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007292	XLOC_007292	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013012	TCONS_00013012	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001012	UBX_dom
IPR029071	Ubiquitin-rel_dom
IPR012336	Thioredoxin-like_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 203..241
None	No IPR available	COILS	Coil	Coil	coord: 249..269
None	No IPR available	COILS	Coil	Coil	coord: 167..194
None	No IPR available	GENE3D	3.40.30.10		coord: 10..199 e-value: 1.9E-4 score: 21.0
None	No IPR available	GENE3D	3.10.20.90		coord: 282..364 e-value: 5.4E-15 score: 54.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 399..461
IPR001012	UBX domain	SMART	SM00166	ubx_3	coord: 276..358 e-value: 6.6E-9 score: 45.6
IPR001012	UBX domain	PFAM	PF00789	UBX	coord: 282..356 e-value: 2.0E-13 score: 50.2
IPR001012	UBX domain	PROSITE	PS50033	UBX	coord: 278..356 score: 15.603
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 221..356
IPR012336	Thioredoxin-like fold	SUPERFAMILY	52833	Thioredoxin-like	coord: 3..108

Blast

[Close]

BLAST of TCONS_00013012-protein vs. Swiss-Prot (Human)
Match: UBXN4 (UBX domain-containing protein 4 OS=Homo sapiens GN=UBXN4 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.119e-58
Identity = 169/515 (32.82%), Postives = 259/515 (50.29%), Query Frame = 0

Query:    1 MQWFQGDVSEAIQKAISEQKMFIVFVRDDKEESQKMEELCNSDEVKNICTDDLCVAINITVDSEAGQQFGAIYPIAFLPCTFFIENDGIPA-AIFPTMEKDKFVEKTEELMAVVRKLKIGESQKPASEAQQQDS-----------------------------PSETTSSD-AVGNKEPTNSTSASE----------EELT-KKEKADLLILKAKAKKAQKEKQEAREREQKRRDEGRELSHARRDLAERQAKQLADDLAKRREEERAARERVKQQIKQDREDKVARFEAEKKAREETKQQKVAKKDAEKEAKAQAVKAARDAAARIQFRLPDGSTSYKQFPSDAKFIVVVNHVTKELAPHIPIVRLTTVYPKHEYTQEDHSKSLRDLGLSPNASVI-VSHGRASSS--SSSSLNPISILMTVLAPLLALIYWFFS--LFKSTPTTTTPNDAPSAQQQEPSSISTNDHRDASVRRRNLGGGSN-------IRRLYDDKPDDEDNATWNGNSTQQM 461
            M WFQG +  AI  A     +F+VFV  D E+S +M      D+V    ++   VAI I   SEA  QF  IYP+  +P +FFI + GIP   I  ++  D+ V +  +    VR++ + +S+   +   Q +S                             P+  T SD A G +   ++TS+ E          E+L  + E+    + + + +K ++E+Q   ++E +RR  G+E+   +R   E   K++ ++  + + E+RAARER+KQQI  DR ++ ARF   K+  E  K   +  K AE E K ++    R   ARIQFRLPDGS+   QFPSDA          + +        L T++P+ E+T+ED+ K L DL L+P+ASV+ +  GR ++S   SSS +  ++L TVL P LA I+   S  LF + P T T     S++   P+S S ++ R+  VR+R L    +       I RL      +++N TWNGNSTQQM
Sbjct:    1 MLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASSNSF-VAIKIDTKSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHK----VRQMHLLKSETSVANGSQSESSVSTPSASFEPNNTCENSQSRNAELCEIPPTSDTKSDTATGGESAGHATSSQEPSGCSDQRPAEDLNIRVERLTKKLEERREEKRKEEEQREIKKEIERRKTGKEMLDYKRKQEEELTKRMLEERNREKAEDRAARERIKQQIALDRAERAARFAKTKEEVEAAKAAALLAKQAEMEVKRESYARERSTVARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTKEDYKKKLLDLELAPSASVVLLPAGRPTASIVHSSSGDIWTLLGTVLYPFLA-IWRLISNFLFSNPPPTQTSVRVTSSEPPNPASSSKSEKREP-VRKRVLEKRGDDFKKEGKIYRLRTQDDGEDENNTWNGNSTQQM 508

The following BLAST results are available for this feature:

BLAST of TCONS_00013012-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013012-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBXN4	1.119e-58	32.82	UBX domain-containing protein 4 OS=Homo sapiens GN...	[more]

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TCONS_00013012-protein (polypeptide) - C. hemisphaerica