TCONS_00013259-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013259-protein
Unique NameTCONS_00013259-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013259-protein ID=TCONS_00013259-protein|Name=TCONS_00013259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MLDLTVQDQTSNLIGNENKSMSDVSNCKVNAVEEKDNADKIIEEKLDESI
EIIGESMQNSNVHMSTELVSESTEHVSESTENLPHSERILLNVSGSRYET
YVETLERFPTTLLGDLRKRQKFYSNGEYYFDRNRVVFDSILFFYQSFGRL
TRPSNVPMSIFENECRYFDLPDEAIVSMKTKEGFLLDIGDLKPARTRRQK
IWYIIQYPESSKNAMVFSIVSIIISTISVFLGFIESIPSVQKSSAENQQF
LFIVDFLVTLWFVIEITVSILAAPISRTIRRPMTYIDFIGSYPYLFFLMS
TGVNDFPVIKFCRICRLFKLMRLFRIFTSSKRTETLTRILASSLPELFLL
FLCLMIIVFLGASLIYMIESRVPGSQFTSVPACSWWALQTVVVLGYGDLV
PETPEGKLLASVFMICGVTTISLPVLSVASKFLKIYEVNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007402XLOC_007402Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013259TCONS_00013259Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR003972K_chnl_volt-dep_Kv1
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 377..399
score: 48.81
coord: 253..276
score: 27.58
coord: 406..432
score: 40.59
coord: 127..146
score: 56.19
coord: 208..236
score: 31.5
coord: 317..343
score: 24.51
coord: 346..369
score: 38.1
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 127..137
score: 61.82
coord: 417..428
score: 48.89
coord: 346..360
score: 39.94
IPR003972Potassium channel, voltage dependent, Kv1PRINTSPR01496SHAKERCHANELcoord: 205..221
score: 52.22
coord: 228..239
score: 25.0
coord: 128..138
score: 71.18
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 217..436
e-value: 1.1E-23
score: 83.6
NoneNo IPR availableGENE3D3.30.710.10coord: 86..185
e-value: 2.1E-18
score: 65.8
NoneNo IPR availableGENE3D1.10.287.70coord: 346..396
e-value: 2.8E-10
score: 39.7
NoneNo IPR availableGENE3D1.20.120.350coord: 210..345
e-value: 9.8E-17
score: 60.4
NoneNo IPR availableGENE3D1.20.5.110coord: 398..434
e-value: 7.7E-11
score: 41.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 216..432
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 89..175
e-value: 8.2E-22
score: 77.3
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 87..178

Blast
[Close]
BLAST of TCONS_00013259-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.687e-71
Identity = 132/382 (34.55%), Postives = 216/382 (56.54%), Query Frame = 0 
Query:   87 ERILLNVSGSRYETYVETLERFPTTLLGDLRKRQKFYS--NGEYYFDRNRVVFDSILFFYQSFGRLTRPSNVPMSIFENECRYFDLPDEAIVSMKTKEGFLLDIGDLKPARTRRQKIWYIIQYPESSKNAMVFSIVSIIISTISVFLGFIESIPSVQKSSA--------ENQQFL----------FIVDFLVTLWFVIEITVSILAAPISRT--IRRPMTYIDFIGSYPYLFFLMSTGVND---------FPVIKFCRICRLFKLMRLFRIFTSSKRTETLTRILASSLPELFLLFLCLMIIVFLGASLIYMIESRVPGSQFTSVPACSWWALQTVVVLGYGDLVPETPEGKLLASVFMICGVTTISLPVLSVASKFLKIYE 437
            ER+++N+SG R+ET ++TL +FP TLLG+ +KR +++     EY+FDRNR  FD+IL++YQS GRL RP NVP+ +F  E ++++L +EA+   +  EGF+ +     P +  ++++W + +YPESS  A V +IVS+++  IS+ +  +E++P ++            +N   +          FIV+ L  +WF  E+ V   A P S+T   +  M +ID +   PY F  + T + +            +   R+ RL ++ R+F++   SK  + L + L +S+ EL LL   L I V L +S +Y  E+    S F+S+P   WWA+ ++  +GYGD+ P T  GK++ S+  I GV TI+LPV  + S F   Y 
Sbjct:   37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACP-SKTDFFKNIMNFIDIVAIIPY-FITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 416
The following BLAST results are available for this feature:
BLAST of TCONS_00013259-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA11.687e-7134.55Potassium voltage-gated channel subfamily A member... [more]
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