|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00013360-protein ID=TCONS_00013360-protein|Name=TCONS_00013360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=851bp
MDLMKDIQPITSPDQIQHSSSDEDSNNLHNEAIKNMSNNPTARFTFPKID
VSNKASPKIDEIAKSNPFVGKNQEDSFDLSASHSTISETESVSGAPSPGP
PSAPPSSLGRSLITIKEARDVYDLQCPICKLNYKNPKVLPCLHSFCHACL
EDTINEVERSFNCPVCRLVIPIPTKGAEAFPLNSFATNMLNILAVESPHN
CTNCEDRELASARCLDCVENLCENCVTAHERIRQTKSHRIVSFEELQNNT
VDESIRCPSFCKIHDREILKYFCESCDSAICRDCAIFEHREHNYLDLKEA
VKSHGKQLLQLLGNTKQKVPILKNALDSILQVENNLQQRKEKIEESINQS
VDSHIQLLEEKRKYLLQQAQDMTSAKDNVLQEQFKRLHFDLDNVVSSCEF
VDNIVLYGNEAEFMDVKYFMLSRLHALSEHKIQLVPEENDVFCFSQNNQN
LMTGTRDFGILTTSQAFAPFCFASERNETLIKTGYLSSFQVVLNNRNSER
ITHGGDDVSAAMVNTEGERIPVDVIDNQNGSYTIKYKVNAKTDHFLQVTL
RGRPIHGSPFTISVSTGIDSLRIGPVLTWFGSNGVESNGKINEAYEPWGI
CCNSRDHVIVTDHNNHKIQIFDQNGKLLRQFGSRGKNDGEIWYPTGICVD
KNDDIFVADHGNHRIQVFTPEGRFVRKIGGRGNMDGLFKGPCDIAIDLQN
RLIVADRDNHRLQVLTVDGKFLFNIGSYGNSEGKFDSPRHLTITNGNHII
VSDSNNGRVQRFDENGQHLGILGKKGSNAGQFQCPAGLCTDTEDNLVVAD
FKNLDVQLFDKMGVFVKKIGEGVFSKPTSLCVTTSGNIFVADRGNHKIYL
F Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 322..349 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 64..109 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..49 |
| None | No IPR available | CDD | cd00021 | BBOX | coord: 261..297
e-value: 1.92309E-8
score: 50.7487 |
| None | No IPR available | CDD | cd14954 | NHL_TRIM71_like | coord: 569..851
e-value: 1.69343E-116
score: 357.243 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 115..174 |
| None | No IPR available | SUPERFAMILY | 57845 | B-box zinc-binding domain | coord: 258..315 |
| None | No IPR available | SUPERFAMILY | 101898 | NHL repeat | coord: 595..851 |
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 126..166
e-value: 4.4E-8
score: 42.9 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 126..167
score: 12.917 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 125..170
e-value: 4.78335E-8
score: 49.7516 |
| IPR000315 | B-box-type zinc finger | SMART | SM00336 | bboxneu5 | coord: 196..243
e-value: 0.053
score: 20.6
coord: 256..297
e-value: 1.5E-9
score: 47.7 |
| IPR000315 | B-box-type zinc finger | PFAM | PF00643 | zf-B_box | coord: 260..295
e-value: 6.4E-8
score: 32.5 |
| IPR000315 | B-box-type zinc finger | PROSITE | PS50119 | ZF_BBOX | coord: 196..243
score: 9.513 |
| IPR000315 | B-box-type zinc finger | PROSITE | PS50119 | ZF_BBOX | coord: 256..297
score: 12.045 |
| IPR003649 | B-box, C-terminal | SMART | SM00502 | RAD_5 | coord: 304..430
e-value: 0.0015
score: 27.8 |
| IPR001298 | Filamin/ABP280 repeat | SMART | SM00557 | flmn_3 | coord: 472..567
e-value: 2.2E-12
score: 57.1 |
| IPR017868 | Filamin/ABP280 repeat-like | PFAM | PF00630 | Filamin | coord: 487..561
e-value: 1.1E-11
score: 45.4 |
| IPR017868 | Filamin/ABP280 repeat-like | PROSITE | PS50194 | FILAMIN_REPEAT | coord: 475..564
score: 15.548 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 114..235
e-value: 1.8E-16
score: 59.6 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 236..307
e-value: 6.4E-4
score: 19.0 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 465..572
e-value: 4.0E-19
score: 68.2 |
| IPR027370 | RING-type zinc-finger, LisH dimerisation motif | PFAM | PF13445 | zf-RING_UBOX | coord: 126..164
e-value: 1.2E-8
score: 34.7 |
| IPR001258 | NHL repeat | PFAM | PF01436 | NHL | coord: 642..668
e-value: 2.3E-10
score: 39.9
coord: 596..621
e-value: 4.2E-7
score: 29.6
coord: 824..848
e-value: 2.5E-5
score: 24.0
coord: 735..762
e-value: 2.9E-5
score: 23.8 |
| IPR011042 | Six-bladed beta-propeller, TolB-like | GENE3D | 2.120.10.30 | | coord: 773..851
e-value: 5.0E-11
score: 41.8
coord: 583..681
e-value: 1.2E-18
score: 66.8
coord: 682..772
e-value: 5.7E-16
score: 58.0 |
| IPR017907 | Zinc finger, RING-type, conserved site | PROSITE | PS00518 | ZF_RING_1 | coord: 141..150 |
| IPR013017 | NHL repeat, subgroup | PROSITE | PS51125 | NHL | coord: 769..812
score: 12.521 |
| IPR013017 | NHL repeat, subgroup | PROSITE | PS51125 | NHL | coord: 675..718
score: 12.254 |
| IPR013017 | NHL repeat, subgroup | PROSITE | PS51125 | NHL | coord: 628..671
score: 16.098 |
| IPR013017 | NHL repeat, subgroup | PROSITE | PS51125 | NHL | coord: 813..851
score: 10.671 |
| IPR013017 | NHL repeat, subgroup | PROSITE | PS51125 | NHL | coord: 597..624
score: 12.685 |
| IPR013017 | NHL repeat, subgroup | PROSITE | PS51125 | NHL | coord: 722..765
score: 11.678 |
| IPR014756 | Immunoglobulin E-set | SUPERFAMILY | 81296 | E set domains | coord: 483..569 |
Blast
BLAST of TCONS_00013360-protein vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1) HSP 1 Score: 379.022 bits (972), Expect = 3.719e-118 Identity = 213/683 (31.19%), Postives = 353/683 (51.68%), Query Frame = 0
Query: 193 LAVESPHNCTNCEDRELASARCLDCVENLCENCVTAHERIRQTKSHRIVSFEELQNNTVDESIRCP-------------------SFCKIHDREILKYFCESCDSAICRDCAIFEHREHNYLDLKEAVKSHGKQLLQLLGNTKQKVPILKNALDSILQVENNLQQRKEKIEESINQSVDSHIQLLEEKRKYLLQQAQDMTSAKDNVLQEQFKRLHFDLDNVVSSCEFVDNIVLYGNEAEFMDVKYFMLSRLHALSEHKIQLVPEENDVFCFSQNNQNLMTGTRDFGILTTSQAFAPFCFASERNETLIKTGYLSSFQVVLNNRNSERITHGGDDVSAAMVNTEGERIPVDVIDNQNGSYTIKYKVNAKTDHFLQVTLRGRPIHGSPFTISVSTGIDSLRIGPVLTWFGSNGVESNGKINEAYEPWGICCNSRDHVIVTDHNNHKIQIFDQNGKLLRQFGSRGKNDGEIWYPTGICVDKNDDIFVADHGNHRIQVFTPEGRFVRKIGGRGNMDGLFKGPCDIAIDLQNRLIVADRDNHRLQVLTVDGKFLFNIGSYGNSEGKFDSPRHLTITNGNHIIVSDSNNGRVQRFDENGQHLGILGKKGSNAGQFQCPAGLCTDTEDNLVVADFKNLDVQLFDKMGVFVKKIGE-----GVFSKPTSLCVTTSGNIFVADRGNHKIYLF 851
L + PH C++C++ AS+RCLDC E+LC+NCV AH+R+R TK H I FC+ HD E+L +C++C ICR+C + H H+++ L+EA++ +QLL + +Q ++ +++ V ++ + + ++ + H + LEE+ LL + + + K L Q ++L +L+ + S+ V ++ G + + + ML+++ L + L P+E+D F+ +Q L + FG ++ S AFAP A+ G ++SF V+ + + E GGD +SA ++ +G +V D QNG+Y + Y+ + +H + VTL + I SPF + V +G + IG FGS G +S+GK+ PWG+ + ++IV D +N++IQ+F G +FG+ G G+ P G+ D + I VAD NHRIQ+FT EG+F+ K G +G +G F P D+A++ + +++V+D NHR+Q+ DG FL G G FDSPR + + H++V+D NN R+ + Q LG +G+ GQF P G+ D E ++VAD +N VQ+F+ G F+ K G G +P+ + +T G I V D GN++I +F
Sbjct: 191 LLLRRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVS-SGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEG-DSDGKL---CRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
|
