TCONS_00013412-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013412-protein
Unique NameTCONS_00013412-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013412-protein ID=TCONS_00013412-protein|Name=TCONS_00013412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=680bp
MLPYNFFANNAIDYLMIQSQNEKAIQCTACSDKTDAISRCVECSEFLCLC
CVTAHRRIRVTKDHKIIPLDTLRYDQSMVHRPVYCPTHSPEVFTYFCEVC
KELVCKDCTILEHRGHKYERLSEALENQKPSVMKLLATNEKEKIPPIARA
LDDVQDMAARLHARTIATKQAVRSCTERCIREIEERCKILLSNIDNLYRE
KSDVLHKQQEVLQEKLMKNKAANQFVNYAFQHGSEAEIFELLDLMKTRLT
DLNDEDLGYDEPEENDVIDHQFDSKAVEHIAENLGKIATSSVFLSYTKLY
GPGVRTAKAEIETFFMIEVFDRKKERCCDHFSPGAIKVKIHAPEGFLINN
KITDNRDGTFTVRYTPVTKGRYDVTVKIRGKSFPKNQFSVRVFEGIDYLK
IGSNFLCFGERGVKNGEFKQPYGIATNSQGQIYVTDKTNNRVQIFDKFGT
FLSEFGSRGTKQGQFSGPEGIAVDQAGMIFVADTENHRIQAFNANGTYHS
KFGTKGSEEGELLSPCGIAIDKIGNICVADRGNHRVQVFTPEGKSLLSFG
SYGDQYGQLNSPSFLAINNDNWFIVADNGNNRIVCYDSNGLYAQETGAKG
SDPGEFSKPNGIVVDQEGFIIVSDTGNNRVQVLTPDLKYFSQFGCHGNND
VEFKQLTDVALTQDGRVAVSDTNNYRVQVF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007492XLOC_007492Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013412TCONS_00013412Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001298Filamin/ABP280_rpt
IPR000315Znf_B-box
IPR013783Ig-like_fold
IPR0110426-blade_b-propeller_TolB-like
IPR001258NHL_repeat
IPR017868Filamin/ABP280_repeat-like
IPR013017NHL_repeat_subgr
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 180..200
NoneNo IPR availableCDDcd00021BBOXcoord: 83..121
e-value: 3.68499E-8
score: 49.5931
NoneNo IPR availableCDDcd14954NHL_TRIM71_likecoord: 397..680
e-value: 1.56912E-119
score: 360.324
NoneNo IPR availableSUPERFAMILY57845B-box zinc-binding domaincoord: 78..137
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 415..680
IPR001298Filamin/ABP280 repeatSMARTSM00557flmn_3coord: 293..395
e-value: 3.3E-14
score: 63.2
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 80..121
e-value: 8.9E-9
score: 45.2
coord: 22..69
e-value: 0.031
score: 23.1
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 82..119
e-value: 8.1E-10
score: 38.6
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 80..121
score: 11.647
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 22..69
score: 10.082
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 289..401
e-value: 2.8E-19
score: 68.7
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 593..680
e-value: 4.0E-13
score: 48.7
coord: 501..592
e-value: 3.0E-17
score: 62.2
coord: 404..500
e-value: 2.5E-19
score: 69.0
IPR001258NHL repeatPFAMPF01436NHLcoord: 606..632
e-value: 2.3E-7
score: 30.4
coord: 559..586
e-value: 3.7E-5
score: 23.4
coord: 514..539
e-value: 5.9E-7
score: 29.1
coord: 465..492
e-value: 3.5E-8
score: 33.0
coord: 418..445
e-value: 7.6E-7
score: 28.8
coord: 654..680
e-value: 1.5E-5
score: 24.7
IPR017868Filamin/ABP280 repeat-likePFAMPF00630Filamincoord: 295..385
e-value: 1.5E-13
score: 51.3
IPR017868Filamin/ABP280 repeat-likePROSITEPS50194FILAMIN_REPEATcoord: 289..392
score: 22.123
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 408..448
score: 14.824
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 593..636
score: 13.611
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 452..495
score: 15.235
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 641..680
score: 11.678
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 546..589
score: 13.652
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 499..542
score: 15.975
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 292..397

Blast
[Close]
BLAST of TCONS_00013412-protein vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.341e-107
Identity = 204/676 (30.18%), Postives = 351/676 (51.92%), Query Frame = 0 
Query:   27 CTACSDKTDAISRCVECSEFLCLCCVTAHRRIRVTKDHKI-----------------IPLDTLRYDQSMV----HRPVYCPTHSPEVFTYFCEVCKELVCKDCTILEHRGHKYERLSEALENQKPSVMKLLATNEKEKIPPIARALDDVQDMAARLHARTIATKQAVRSCTERCIREIEERCKILLSNIDNLYREKSDVLHKQQEVLQEKLMKNKAANQFVNYAFQHGSEAEIFELLDLMKTRLTDLNDEDLGYDEPEENDVIDHQFDSKAVEHIAENLGKIATSSVFLSYTKLYGPGVRTAKAEIETFFMIEVFDRKKERCCDHFSPG-AIKVKIHAPEGFLINNKITDNRDGTFTVRYTPVTKGRYDVTVKIRGKSFPKNQFSVRVFEGIDYLKIGSNFLCFGERGVKNGEFKQPYGIATNSQGQIYVTDKTNNRVQIFDKFGTFLSEFGSRGTKQGQFSGPEGIAVDQAGMIFVADTENHRIQAFNANGTYHSKFGTKGSEEGELLSPCGIAIDKIGNICVADRGNHRVQVFTPEGKSLLSFGSYGDQYGQLNSPSFLAINNDNWFIVADNGNNRIVCYDSNGLYAQETGAKGSDPGEFSKPNGIVVDQEGFIIVSDTGNNRVQVLTPDLKYFSQFGCHGNNDVEFKQLTDVALTQDGRVAVSDTNNYRVQVF 680
            C++C +   A SRC++C E LC  CV AH+R+R+TKDH I                 +         S++     R  +C  H  EV   +C+ C   +C++CT+  H GH +  L EAL++ +   ++LLA  ++ +   I  +++  Q +A ++  +    +  V++ T R  + +EER   LL  ++ + + K+  L+ Q E L++ L K ++    V    + G   +I    D M  ++ +L        +P+E+D +      +A+    ++ G + +S  F   TK  G G++ A       F +  +D   E      S G  +   +  P+G L   +++D ++GT+ V Y P  +G + V+V +  +    + F V V  G  Y+ IG   L FG  G  +G+  +P+G++ + +G I V D++NNR+Q+F   G F  +FG+ G++ GQF  P G+A D +  I VAD +NHRIQ F   G +  KFG KG++ G+   P  +A++  G I V+D  NHR+Q+F P+G  L  +G  G  +   +SP  +A N++   +V D  N+R++    +   A+  G++G+  G+F +P G+ VDQEG IIV+D+ N+RVQ+   +  +  +FG  G+   +  + + +A+T DG + V D  N R+ VF
Sbjct:  199 CSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGR-QAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVR-SLLQPQEDDRVMFTPPDQALYLAIKSFGFV-SSGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGE---PRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
BLAST of TCONS_00013412-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN413.341e-10730.18E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
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