TCONS_00013473-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013473-protein
Unique Name	TCONS_00013473-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	730

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013473-protein ID=TCONS_00013473-protein|Name=TCONS_00013473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=730bp
MGITGLLPLLKDIQVKTNVSNFKGQTAGIDAYCWLHKGTYGCAQDLIMKK
PTRAYVSYVMKRVRMLINAGVTPLLVFDGGHLPAKAGKEAERRARRKEYK
EKGMAALREEKSSVAFDCFQKACDVTPEMASHVIAECAKLNVRCVVAPYE
ADAQLAYLMIQGVTQLTISEDSDLLLYGCSKVLYKMGSDGEGTLVDLVNL
PKVRSVKLSQFTMEQFRWMCMLSGCDYLPSIKGMGLIKAYKLLQRHKAAK
QAIKALKLDRNHFVPPDYEENFRKSEMVFKYQLVFDIQLRRCVRLRDHEE
NDPDLSEEDLDFAGPKVPQIKALAVALGNIDPISGKDIGNLEDFASGKVE
MFQKSTSWMATANIKAREPKFRSNASASRSQGFSSQESLASSPDLTPPST
DSVGSQDDLSTKKKLFETSPQACATKSLKRLSSELSEENTSSVSNWKKLY
QQSEPPNKRLNYQGVFKSSSRRRNPFNRNKTVNDDTPANTVVVSRYFSDE
AAEPEPALPAEVADDHVQEDIPNTPPSSKKEHDSPKGSPSIIQQSPSRSK
MNGSFLDYLDKTDCKISNPIRTNQKKRLSLRRSPRKAPSQTRIDFAAKEN
CTIKKKLLEKDDSTSREPLKKKDEMNSPSKEEDIIDSQIDKKGELDRKLS
IDEGEGEGKPEAFIDFEINEQNQDDNIVIKEVEPIKKDEKPALFYIADDD
SNQNDKMLEKAEIKVLCEDSILEDENEDDN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007529	XLOC_007529	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013473	TCONS_00013473	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006084	XPG/Rad2
IPR008918	HhH2
IPR006085	XPG_DNA_repair_N
IPR006086	XPG-I_dom
IPR029060	PIN_domain-like
IPR019974	XPG_CS
IPR020045	5-3_exonuclease_C

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

Vocabulary: **Molecular Function**
Term	Definition
GO:0004518	nuclease activity
GO:0003677	DNA binding
GO:0003824	catalytic activity
GO:0016788	hydrolase activity, acting on ester bonds

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0004518	nuclease activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006084	XPG/Rad2 endonuclease	PRINTS	PR00853	XPGRADSUPER	coord: 73..92 score: 44.06 coord: 216..231 score: 43.95 coord: 24..38 score: 35.62 coord: 137..154 score: 40.97 coord: 158..178 score: 39.73
IPR008918	Helix-hairpin-helix motif, class 2	SMART	SM00279	HhH_4	coord: 213..246 e-value: 2.0E-9 score: 47.3
IPR006085	XPG N-terminal	SMART	SM00485	xpgn3	coord: 1..99 e-value: 1.8E-34 score: 130.5
IPR006085	XPG N-terminal	PFAM	PF00752	XPG_N	coord: 1..98 e-value: 7.2E-20 score: 71.3
IPR006086	XPG-I domain	SMART	SM00484	xpgineu	coord: 138..222 e-value: 2.6E-12 score: 56.9
IPR006086	XPG-I domain	PFAM	PF00867	XPG_I	coord: 139..226 e-value: 5.4E-22 score: 77.9
None	No IPR available	GENE3D	1.10.150.20		coord: 210..282 e-value: 4.4E-18 score: 64.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 499..555
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 449..487
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..417
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 567..661
None	No IPR available	CDD	cd09908	H3TH_EXO1	coord: 214..286 e-value: 5.72418E-33 score: 121.143
None	No IPR available	CDD	cd09857	PIN_EXO1	coord: 1..204 e-value: 2.96746E-109 score: 332.153
IPR029060	PIN domain-like	GENE3D	3.40.50.1010		coord: 1..207 e-value: 1.9E-50 score: 170.9
IPR029060	PIN domain-like	SUPERFAMILY	88723	PIN domain-like	coord: 2..226
IPR019974	XPG conserved site	PROSITE	PS00842	XPG_2	coord: 141..155
IPR019974	XPG conserved site	PROSITE	PS00841	XPG_1	coord: 71..85
IPR020045	5'-3' exonuclease, C-terminal domain	SUPERFAMILY	47807	5' to 3' exonuclease, C-terminal subdomain	coord: 211..340

Blast

[Close]

BLAST of TCONS_00013473-protein vs. Swiss-Prot (Human)
Match: EXO1 (Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 3.695e-78
Identity = 189/484 (39.05%), Postives = 254/484 (52.48%), Query Frame = 0

Query:    1 MGITGLLPLLKDIQVKTNVSNFKGQTAGIDAYCWLHKGTYGCAQDLIMKKPTRAYVSYVMKRVRMLINAGVTPLLVFDGGHLPAKAGKEAERRARRKEYKEKGMAALREEKSSVAFDCFQKACDVTPEMASHVIAECAKLNVRCVVAPYEADAQLAYLMIQGVTQLTISEDSDLLLYGCSKVLYKMGSDGEGTLVDLVNLPKVRSVKLSQFTMEQFRWMCMLSGCDYLPSIKGMGLIKAYKLLQRHKAAKQAIKALK-----LDRNHFVPPDYEENFRKSEMVFKYQLVFDIQLRRCVRLRDHEENDPDLSEEDLDFAGPKVPQIKALAVALGNIDPISGKDIGNLEDF----ASGKVEMFQKSTSW-----MATANIKAREPKFRSNASASRSQGFSSQESLASSPDLTP-PSTDSVGSQDDLSTKKKLFETSPQACATKSLKRLSSELSEEN---TSSVSNWKKLYQQSEPPNKRLNYQGVF 466
            MGI GLL  +K+     +V  +KGQ   +D YCWLHKG   CA+ L   +PT  YV + MK V ML++ G+ P+LVFDG  LP+K   E  RR RR+    KG   LRE K S A +CF ++ ++T  MA  VI       V C+VAPYEADAQLAYL   G+ Q  I+EDSDLL +GC KV+ KM   G G  +D   L   R +    FT E+FR+MC+LSGCDYL S++G+GL KA K+L R       +K +K     L  N  VP DY   F ++   F YQLVFD   R+ + L  +E+   D+  E L +AG  V    AL +ALGN      KDI   E          +    +S SW       +AN+ +    +  N S     G     +++ +P L   PST  VG +  +STK       P+  +     R S+ELSE++     S+S  KK  + S   NK L++  VF
Sbjct:    1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQLG-DVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVL-RLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNAYED---DVDPETLSYAGQYVDDSIALQIALGN------KDINTFEQIDDYNPDTAMPAHSRSHSWDDKTCQKSANVSS---IWHRNYSPRPESG-----TVSDAPQLKENPST--VGVERVISTKGLNL---PRKSSIVKRPR-SAELSEDDLLSQYSLSFTKKTKKNSSEGNKSLSFSEVF 459

The following BLAST results are available for this feature:

BLAST of TCONS_00013473-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013473-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EXO1	3.695e-78	39.05	Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2	[more]

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TCONS_00013473-protein (polypeptide) - C. hemisphaerica