TCONS_00013842-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013842-protein
Unique NameTCONS_00013842-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013842-protein ID=TCONS_00013842-protein|Name=TCONS_00013842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MDETSIITQVQKEQCQQVNSNGNHVVEEKDPRITPTPKKRRQRGFLSSIF
CCFGAQQSAKASFQTNSSGGGGGSTGGSTTRGGEIASNPNTAPTTNNTTA
SVIHQASPNNNQNNLSKCYEDDKNHEDVVHEESSPESFYLLPALRHQDLD
KKCAVIDLDETLVHSSFKPVDNPDFIVPVEIDGIVHQVYVLKRPHVDEFL
RRMGEIFECVLFTASLAKYADPVADLLDKTNCFRTRLFRESCVYYKGNYV
KVMRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007734XLOC_007734Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013842TCONS_00013842Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004274FCP1_dom
IPR023214HAD-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004274FCP1 homology domainSMARTSM00577forpap2coord: 150..255
e-value: 1.4E-30
score: 117.6
IPR004274FCP1 homology domainPFAMPF03031NIFcoord: 152..253
e-value: 6.0E-27
score: 94.2
IPR004274FCP1 homology domainPROSITEPS50969FCP1coord: 147..255
score: 27.351
IPR023214HAD-like domainGENE3D3.40.50.1000coord: 137..255
e-value: 1.4E-25
score: 89.3
IPR023214HAD-like domainSUPERFAMILY56784HAD-likecoord: 139..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..97

Blast
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BLAST of TCONS_00013842-protein vs. Swiss-Prot (Human)
Match: CTDS1 (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.054e-64
Identity = 93/113 (82.30%), Postives = 102/113 (90.27%), Query Frame = 0 
Query:  139 YLLPALRHQDLDKKCAVIDLDETLVHSSFKPVDNPDFIVPVEIDGIVHQVYVLKRPHVDEFLRRMGEIFECVLFTASLAKYADPVADLLDKTNCFRTRLFRESCVYYKGNYVK 251
            YLLP  + QD DK C VIDLDETLVHSSFKPV+N DFI+PVEIDG+VHQVYVLKRPHVDEFL+RMGE+FECVLFTASLAKYADPVADLLDK   FR RLFRESCV+++GNYVK
Sbjct:   78 YLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVK 190
The following BLAST results are available for this feature:
BLAST of TCONS_00013842-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTDS11.054e-6482.30Carboxy-terminal domain RNA polymerase II polypept... [more]
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