TCONS_00014108-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014108-protein
Unique NameTCONS_00014108-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014108-protein ID=TCONS_00014108-protein|Name=TCONS_00014108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MPEPHQQGTVPVVVDPYIALCLRPHQRQGVTFLYECVMDMRSEDCESPTY
GAILADEMGLGKTIQCISLIWTLLKQGIYGRPTVKNVIVVTPNSLAKNWS
KEFCKWLGSERLNPFVVSSTNRVDEFLLRPNNQVMIISYEMVTRCIEDIR
KVAFDLLVCDEAHRLKNTNVKITSIISGLQIPKCILLTGTPIQNNLEEFH
TLADLACPGVFGTISAFRRNFIEPITRAQQPGCTADDKQLSETCLQNLTE
IMNRFCLRRTSEVNQKHLPPKVEYVVFVRMSSLQRTLYNSLIQSTLYTDC
MSNQESGSKHLLCIGALKKLCNSPHILRQFVENKTDCKNQIFEDLLDHLP
EDDDIEDCCKLQVVHSLISSFRTNKEKVLLVALSTKVLDILAKFCDSIEI
KYVRLDGKMTADQRQSSIDRFNDKSSNIMVFLLSSKAGGVGLNLTAASRL
ILYDIDWNPANDLQAMARIWRDGQKKKVHIYRLLVNGSIEEKIYQRQIIK
NNLSGTIVDSLANNKVCFSTEQLKDLFKLRESESCHTHDLLQCQCFKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007902XLOC_007902Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014108TCONS_00014108Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR000330SNF2_N
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 18..217
e-value: 4.9E-31
score: 119.1
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 43..209
score: 21.55
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 389..473
e-value: 2.0E-23
score: 93.8
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 361..472
e-value: 1.4E-16
score: 60.7
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 363..519
score: 16.315
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 35..326
e-value: 3.5E-56
score: 190.3
NoneNo IPR availableGENE3D3.40.50.300coord: 348..511
e-value: 1.1E-32
score: 112.2
NoneNo IPR availableGENE3D3.40.50.10810coord: 3..258
e-value: 4.7E-53
score: 179.3
NoneNo IPR availableCDDcd00046DEXDccoord: 51..191
e-value: 1.86153E-22
score: 92.7856
NoneNo IPR availableCDDcd00079HELICccoord: 360..481
e-value: 2.69624E-27
score: 105.783
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..259
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 265..545

Blast
[Close]
BLAST of TCONS_00014108-protein vs. Swiss-Prot (Human)
Match: RA54B (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1)

HSP 1 Score: 526.554 bits (1355), Expect = 1.833e-178
Identity = 275/552 (49.82%), Postives = 363/552 (65.76%), Query Frame = 0 
Query:   10 VPVVVDPYIALCLRPHQRQGVTFLYECVMDMRSEDCESPTYGAILADEMGLGKTIQCISLIWTLLKQGIYG-RPTVKNVIVVTPNSLAKNWSKEFCKWLGSERLNPFVVSSTNRVDEFLLRPNNQVMIISYEMVTRCIEDIRKVAFDLLVCDEAHRLKNTNVKITSIISGLQIPKCILLTGTPIQNNLEEFHTLADLACPGVFGTISAFRRNFIEPITRAQQPGCTADDKQLSETCLQNLTEIMNRFCLRRTSEVNQKHLPPKVEYVVFVRMSSLQRTLYNSLIQSTLYTDCMSNQESGSKHLLCIGALKKLCNSPHILRQFVENK---TDC-KNQ---IFEDLLDHLPEDDDI-----EDCCKLQVVHSLISSFRTNK--EKVLLVALSTKVLDILAKFCDSIEIKYVRLDGKMTADQRQSSIDRFNDKSSNIMVFLLSSKAGGVGLNLTAASRLILYDIDWNPANDLQAMARIWRDGQKKKVHIYRLLVNGSIEEKIYQRQIIKNNLSGTIVD-SLANNKVCFSTEQLKDLFKLRESESCHTHDLLQCQC 545
            V VV+DPY+   LRPHQ++G+ FLYECVM MR         GAILADEMGLGKT+QCISLIWTL  QG YG +P +K  ++VTP SL  NW KEF KWLGSER+  F V   ++V+EF+      V+IISYEM+ R ++ I+ + FDLL+CDE HRLKN+ +K T+ +  L   K I+LTGTPIQN+L+EF  L D   PG+ G++S++R+ + EPI  +++P  + ++K+L E     LT +   F LRRT E+  K+LPPK+E VVF R  +LQ  LY  L+ S +   C+      S HL+CIGALKKLCN P +L   ++ K   + C KN+   +++ LL   P D +      ++  KLQV+  L++     +  EKV+LV+  T+ L+IL + C      Y RLDG+    QRQ  +D FN + S+  +FLLSSKAGGVGLNL   S LILYDIDWNPA D+QAM+R+WRDGQK  VHIYRLL  G+IEEKIYQRQI K  L G +VD +  +  + FS E+LK+LF L ES  C THDLL C+C
Sbjct:  284 VDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNG----RCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDLLDCEC 831
The following BLAST results are available for this feature:
BLAST of TCONS_00014108-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RA54B1.833e-17849.82DNA repair and recombination protein RAD54B OS=Hom... [more]
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