green fluorescent protein (polypeptide) - C. hemisphaerica

Overview
Namegreen fluorescent protein
Unique NameTCONS_00014225-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014225-protein ID=TCONS_00014225-protein|Name=green fluorescent protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MDMSSFNVGALIFNKELPFVVEVDFDIDDHKFSIRGKGVGNAEKGLMVGK
YVVSEGELPCSWSAITHNFQYGQVCFTRYPKDIPDHIKSLFPEGYVQTRH
SHFVDDGEYTSVHTLTYENGVIYNRVKVNGGGFKPDGNVFGKRLREVEPD
ICSVYFPGKDGYNCEFVKLSETVDGDYQAIRIDQVIRPLSDGPSLPMTKL
YHHYKFEYSKDANETREHIIMKEQVHASHHTSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007956XLOC_007956Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014225TCONS_00014225Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000786Green_fluorescent_prot
IPR011584GFP-related
IPR009017GFP
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0008218bioluminescence
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008218 bioluminescence
biological_process GO:0006091 generation of precursor metabolites and energy
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000786Green fluorescent protein, GFPPRINTSPR01229GFLUORESCENTcoord: 33..53
score: 33.33
coord: 174..193
score: 40.0
coord: 8..32
score: 39.2
coord: 54..74
score: 33.33
coord: 112..132
score: 19.05
coord: 75..90
score: 37.5
coord: 215..233
score: 25.83
coord: 133..152
score: 34.0
NoneNo IPR availableGENE3D2.40.155.10coord: 11..229
e-value: 1.3E-56
score: 191.2
IPR011584Green fluorescent protein-relatedPFAMPF01353GFPcoord: 13..226
e-value: 1.0E-34
score: 119.9
IPR009017Green fluorescent proteinSUPERFAMILY54511GFP-likecoord: 7..229

Blast
The following BLAST results are available for this feature:
BLAST of green fluorescent protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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