TCONS_00014484-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014484-protein
Unique NameTCONS_00014484-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014484-protein ID=TCONS_00014484-protein|Name=TCONS_00014484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=660bp
MATNKDVISTSQLFIDLSRNFKNGNYAEAQKFAGKILKLDANDVDALKCK
IVCLLQQSSFKSALDSINSNEKKGLLKMDFEKAYCLYRLNRLKEAESVIS
QIPEKSDREKDLLAQVRYRMEDYKGCLDLYKDLVKNSDDDYGDEREANMA
AVIAAAKLWKNQDMGVSHVRSDTYELCYNYACLQLAQGEMEKAKATLLNA
ETLCRQFLASEEDVTEEEIEDELSIIKGQLSYIYQLQGKADQALTEYNKV
LKNKPSDVALTAVISNNIVAIHKDKDLFNSKKRLKAMSSEGLNHKLTCQQ
QEVMEVNKCLMMMYTNQPAQCRKTIEELKKNFTNISQERIALLEVAIFAR
EKQWDKAIDHLQKIVETGDCTDGTILTLAQLSLQKGKYEDVIKLLQKLTS
IRYKPAVVSLCVSLYNILGEVEKASSYLDEAIKHCSSVPALKKDAVTFMR
ECSNMKFTAGDIESGVKMLERLRSEDPSEVSTLAKIVVAYSKIDPEKAKQ
YSVDLPSLDTSGNAALNLDVLEMTEMIGSFRFSKKRKTSVDETEAKEEAI
MKRKRRKRKKGKLPKSYNPDVDPDPERWLPRWERSTYKYKKSKRNPGVGK
GTQGAVGGGSAEPQPASPKPTIASPKSGSSSAGPSPSVVPPRQQKPGAKS
KGKKKKKGGW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008102XLOC_008102Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014484TCONS_00014484Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR026270SRP72
IPR013699Signal_recog_part_SRP72_RNA-bd
IPR031545SRP_TPR-like
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:00083127S RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0048500 signal recognition particle
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 183..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 534..660
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 175..204
e-value: 0.094
score: 12.9
coord: 229..256
e-value: 0.1
score: 12.8
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 224..257
score: 8.142
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 92..359
e-value: 4.1E-15
score: 55.3
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 360..390
e-value: 0.0017
score: 17.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 391..439
e-value: 0.0025
score: 17.2
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 10..91
e-value: 2.2E-5
score: 23.9
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 440..517
e-value: 0.038
score: 13.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 171..255
coord: 20..106
coord: 336..491
IPR026270Signal recognition particle, SRP72 subunitPIRSFPIRSF038922SRP72coord: 1..660
e-value: 1.1E-191
score: 636.8
IPR013699Signal recognition particle, SRP72 subunit, RNA-bindingPFAMPF08492SRP72coord: 534..588
e-value: 1.7E-16
score: 60.3
IPR031545Putative TPR-like repeatPFAMPF17004SRP_TPR_likecoord: 35..154
e-value: 2.4E-18
score: 66.1
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 224..257
score: 8.587
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 338..479
score: 7.475

Blast
[Close]
BLAST of TCONS_00014484-protein vs. Swiss-Prot (Human)
Match: SRP72 (Signal recognition particle subunit SRP72 OS=Homo sapiens GN=SRP72 PE=1 SV=3)

HSP 1 Score: 443.351 bits (1139), Expect = 1.500e-147
Identity = 260/659 (39.45%), Postives = 407/659 (61.76%), Query Frame = 0 
Query:    8 ISTSQLFIDLSRNFKNGNYAEAQKFAGKILKLDANDVDALKCKIVCLLQQSSFKSALDSINSNEKKGLL---KMDFEKAYCLYRLNRLKEAESVISQIPEKSDREKDLLAQVRYRMEDYKGCLDLYKDLVKNSDDDYGDEREANMAAVIAAAKLWKN---QDMGVSHVRSDTYELCYNYACLQLAQGEMEKAKATLLNAETLCRQFLASEEDVTEEEIEDELSIIKGQLSYIYQLQGKADQALTEYNKVLKNKPSDVALTAVISNNIVAIHKDKDLFNSKKRLKAMSSEGLNHKLTCQQQEVMEVNKCLMMMYTNQPAQCRKTIEELKKNFTNISQERI--ALLEVAIFAREKQWDKAIDHLQKIVETGDCTDGTI-LTLAQLSLQKGKYEDVIKLLQKLTSIRYKPAVVSLCVSLYNILGEVEKASSYLDEAIK----HCSSVPALKKDAVTFMRECSNMKFTAGDIESGVKMLERLRSEDPSEVSTLAKIVVAYSKIDPEKAKQYSVDLPSLDTSGNAALNLDVLEMTEMIGSFRFSKKRKTSVDETEAKEEAIMK-RKRRKRKKGKLPKSYNPDVDPDPERWLPRWERSTYKYKKSKRNPG-VGKGTQGAVGGGSAE---PQPASPKPTIASPKSGSSSAGPSPSVVPPRQQKPGA 648
            +S   L+ +++R  +NG++  A K   KIL+++ +DV AL CK+VCL+Q  SFK AL+ IN++ K  +L    + FEKAYC YRLNR++ A   I    +++D+ K+L  QV YR+E Y  CL +Y+DLV+NS DDY +ER+ N++AV+AA   W+    +++G+   +  T+ELCYN AC  + QG++ +A   L  AE LCR+ L+ + D TEE+ + EL+II GQ++YI QLQG+ ++AL  YN+++K KP+DV L AVI+NNI+ I+KD+++F+SKK++K  ++EG+  KL+ +Q + +E NK L+ MYTNQ  QCRK    L+      S E +   L++ A   REKQ  KAI+ LQ+  +        I LT+AQL + +G       +L+ +  +++KP +VS  V++Y+   +++ A     +AI+    H    PA     ++ +RE +N K   G  +  +  L++L  ++P ++ TLA+++ AYS +DPEKAK  S  LPS D+    +L +DV  +    G+    KK      +++ KE+     +K++K+KKGKLPK+Y+P V PDPERWLP  ERS Y+ +K  +    +GKGTQGA  G S+E    +  S  PT   P S ++ +  + +++PPR QKP  
Sbjct:    9 VSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTK--VLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGL---QEGTHELCYNTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISASLQSQ----SPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPA----HLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDS---MSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAG 651
The following BLAST results are available for this feature:
BLAST of TCONS_00014484-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRP721.500e-14739.45Signal recognition particle subunit SRP72 OS=Homo ... [more]
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