TCONS_00015025-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015025-protein
Unique NameTCONS_00015025-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015025-protein ID=TCONS_00015025-protein|Name=TCONS_00015025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
SKTQAHWYGVTFGSARGLSFFANSAAFALGGYLVQNDELGFQDVFKIIIA
ATFGSMIAGQALSFTPDYLSAKVAAGRLFKLFDTESKIDVNQPGGKIKEC
LDGDVDFLDVQFNYPTRPDVPVLQGLSLQIRTGQKVALVGASGCGKSTAV
GLLERFYNPKKGDITIDGMDISDYNLKWLRSQISIVSQEPVLFAKSIKDN
ITYGLTMDDGKPIPQKLIEESARNANIHDFIMTLPLGYETLVGEKGTLIS
GGQKQRIAIARALIRDPRILLLDEATSALDSESEKVVQDALDRAMEGRTS
IIIAHRLSTIQNADIIAVIQGGRVIEWGTHSELLTMRGAYYVLNSAQM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008411XLOC_008411Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015025TCONS_00015025Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003439ABC_transporter-like
IPR017871ABC_transporter_CS
IPR011527ABC1_TM_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO:0042626ATPase activity, coupled to transmembrane movement of substances
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 132..309
e-value: 2.9E-15
score: 66.7
NoneNo IPR availableGENE3D3.40.50.300coord: 102..344
e-value: 6.2E-74
score: 248.0
NoneNo IPR availableGENE3D1.20.1560.10coord: 1..93
e-value: 1.5E-11
score: 43.3
NoneNo IPR availableCDDcd03249ABC_MTABC3_MDL1_MDL2coord: 105..347
e-value: 1.3838E-146
score: 415.785
IPR003439ABC transporter-likePFAMPF00005ABC_trancoord: 123..277
e-value: 9.6E-35
score: 120.0
IPR003439ABC transporter-likePROSITEPS50893ABC_TRANSPORTER_2coord: 105..346
score: 25.43
IPR017871ABC transporter, conserved sitePROSITEPS00211ABC_TRANSPORTER_1coord: 249..263
IPR011527ABC transporter type 1, transmembrane domainPROSITEPS50929ABC_TM1Fcoord: 1..70
score: 10.127
IPR011527ABC transporter type 1, transmembrane domainSUPERFAMILY90123ABC transporter transmembrane regioncoord: 4..85
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 98..347

Blast
[Close]
BLAST of TCONS_00015025-protein vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3)

HSP 1 Score: 385.571 bits (989), Expect = 5.061e-124
Identity = 187/347 (53.89%), Postives = 244/347 (70.32%), Query Frame = 0 
Query:    1 SKTQAHWYGVTFGSARGLSFFANSAAFALGGYLVQNDELGFQDVFKIIIAATFGSMIAGQALSFTPDYLSAKVAAGRLFKLFDTESKIDVNQPGGKIKECLDGDVDFLDVQFNYPTRPDVPVLQGLSLQIRTGQKVALVGASGCGKSTAVGLLERFYNPKKGDITIDGMDISDYNLKWLRSQISIVSQEPVLFAKSIKDNITYGLTMDDGKPIPQKLIEESARNANIHDFIMTLPLGYETLVGEKGTLISGGQKQRIAIARALIRDPRILLLDEATSALDSESEKVVQDALDRAMEGRTSIIIAHRLSTIQNADIIAVIQGGRVIEWGTHSELLTMRGAYYVLNSAQ 347
            S  +AH +G+TF   + + +F+ +  F  G YLV +  + F+DV  +  A  FG+M  GQ  SF PDY  AK++A  +  + +    ID     G +   L+G+V F +V FNYPTRPD+PVLQGLSL+++ GQ +ALVG+SGCGKST V LLERFY+P  G + +DG +I   N++WLR+ + IVSQEP+LF  SI +NI YG   D+ + + Q+ I  +A+ ANIH FI +LP  Y T VG+KGT +SGGQKQRIAIARAL+R P ILLLDEATSALD+ESEKVVQ+ALD+A EGRT I+IAHRLSTIQNAD+I V Q GRV E GTH +LL  +G Y+ + S Q
Sbjct:  931 SLRKAHIFGITFSFTQAMMYFSYAGCFRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYG---DNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274

HSP 2 Score: 313.538 bits (802), Expect = 2.194e-97
Identity = 160/341 (46.92%), Postives = 232/341 (68.04%), Query Frame = 0 
Query:   10 VTFGSARGLSFFANSAAFALGGYLVQNDELGFQDVFKIIIAATFGSMIAGQALSFTPDYLSAKVAAGRLFKLFDTESKIDVNQPGGKIKECLDGDVDFLDVQFNYPTRPDVPVLQGLSLQIRTGQKVALVGASGCGKSTAVGLLERFYNPKKGDITIDGMDISDYNLKWLRSQISIVSQEPVLFAKSIKDNITYG---LTMDDGKPIPQKLIEESARNANIHDFIMTLPLGYETLVGEKGTLISGGQKQRIAIARALIRDPRILLLDEATSALDSESEKVVQDALDRAMEGRTSIIIAHRLSTIQNADIIAVIQGGRVIEWGTHSELLTMRGAYYVLNSAQ 347
            ++ G+A  L + + + AF  G  LV + E     V  +  +   G+   GQA      + +A+ AA  +FK+ D +  ID     G   + + G+++F +V F+YP+R +V +L+GL+L++++GQ VALVG SGCGKST V L++R Y+P +G +++DG DI   N+++LR  I +VSQEPVLFA +I +NI YG   +TMD+        IE++ + AN +DFIM LP  ++TLVGE+G  +SGGQKQRIAIARAL+R+P+ILLLDEATSALD+ESE VVQ ALD+A +GRT+I+IAHRLST++NAD+IA    G ++E G H EL+  +G Y+ L + Q
Sbjct:  297 ISIGAAFLLIYASYALAFWYGTTLVLSGEYSIGQVLTVFFSVLIGAFSVGQASPSIEAFANARGAAYEIFKIIDNKPSIDSYSKSGHKPDNIKGNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGRENVTMDE--------IEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQ 629
The following BLAST results are available for this feature:
BLAST of TCONS_00015025-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDR15.061e-12453.89Multidrug resistance protein 1 OS=Homo sapiens GN=... [more]
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