TCONS_00015253-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015253-protein
Unique Name	TCONS_00015253-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	333

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015253-protein ID=TCONS_00015253-protein|Name=TCONS_00015253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
TWKSKVKLFAQFSFKFLSVRALLQLQTNFGVSSYYLFNFFSLKSRRMDLE
SKVESFKKDGYVVLESFLQEEECDQLRSRSKELIEEMDLSTHPKTVFSTT
NQKNNITGHDEYFMKSQDKIRFFFEEFAFTEGVLNRPKHLSINKIGHGLC
FKDEGYKKATFTDTIKEFVKRLDFKEPAIVQSMVIFKQPGIGGVVTPHED
GTFLMNEPSKLIGLWIALEDAEIENGCLWFIPGTHKDRTSLRMIRNPDKD
GPPTVFRGDRDTYDDSLFKAVPVKKGSAIIIHGHVVHKSEKNLSNRSREI
YTYHIAETHQSKWLNENWLQETEDYSFMKLYEN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008531	XLOC_008531	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015253	TCONS_00015253	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008775	Phytyl_CoA_dOase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.620		coord: 39..322 e-value: 6.1E-44 score: 149.7
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 116..329 coord: 50..86
IPR008775	Phytanoyl-CoA dioxygenase	PFAM	PF05721	PhyH	coord: 56..299 e-value: 1.4E-50 score: 172.4

Blast

[Close]

BLAST of TCONS_00015253-protein vs. Swiss-Prot (Human)
Match: PHYD1 (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo sapiens GN=PHYHD1 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 1.714e-92
Identity = 132/284 (46.48%), Postives = 183/284 (64.44%), Query Frame = 0

Query:   51 SKVESFKKDGYVVLESFLQEEECDQLRSRSKELIEEMDLSTHPKTVFSTTNQKN-NITGHDEYFMKSQDKIRFFFEEFAFTE-GVLNRPKHLSINKIGHGLCFKDEGYKKATFTDTIKEFVKRLDFKEPAIVQSMVIFKQPGIGGVVTPHEDGTFLMNEP-SKLIGLWIALEDAEIENGCLWFIPGTHKDRTSLRMIRNPDKDGPPTVFRGDRDTYDDSLFKAVPVKKGSAIIIHGHVVHKSEKNLSNRSREIYTYHIAETHQSKWLNENWLQETEDYSFMKLY 331
            S+++ F++DG++VLE FL  EEC  ++ R  E++ EMD+  H +T FST  ++     G  +YF+ S DKIRFFFE+  F E G    P   SINKIGH L   D  +K  T +  ++   + L  + P +VQSM IFKQP  GG V+PH+D +FL  EP  +++G+WIA+EDA +ENGCLWFIPG+H    S RM+R P    P T F G     D+SLF   PV++G+ ++IHG VVHKS++NLS+RSR+ YT+H+ E   + W  ENWLQ T +  F +LY
Sbjct:    7 SQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLY 290

The following BLAST results are available for this feature:

BLAST of TCONS_00015253-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015253-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PHYD1	1.714e-92	46.48	Phytanoyl-CoA dioxygenase domain-containing protei...	[more]

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TCONS_00015253-protein (polypeptide) - C. hemisphaerica