TCONS_00015424-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015424-protein
Unique Name	TCONS_00015424-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	597

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015424-protein ID=TCONS_00015424-protein|Name=TCONS_00015424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp
MVGLMANCFAWLKSKNKPPKDVKLVIIGLDDAGKTTTVACLQGEPPDGIT
PTVGFSNANLKFGKCNVTLYDLGGGVNVRTVWKKYFAEIYGIIFTIDSCN
KDRIEESRDALSEIFQDPKVSGKPILIFANKQDKEGALDVPSIKKKLKIQ
TLSKKYEFKYNVFPCSAIKGFGNKTDKSIRDGFNWLLSAVNNDYQTIHEK
VEHESKIQKEQEAKERKEKWDRIRKERAEREKAAQEAGVNEDEGENNEDD
DDVMSGPFRNINDQIKITEKREKKEKENRKKIKAYMDNKANEEEDIEDDE
TDSPPKKNKSKKKKGKTKKKRDCEDDEDDDTSPKKDDLSNVKGSRDSGLS
QSYEELERPLPPPPSKGKKKKKKKIVQYEDEDEDGEEDEIEMNNSRVIMV
NSSENVKESNNKRRSKQKLKKSKHLDESDDDNVRNEEEEDARTSQEKMND
SRAEMFRARSSDALQSSENLNSSNVKKSKKKTKKKKKEQNGNVISNTDDT
NEDELERESEPPQHQTKKKKKKKKNRTEPNNVCQNAVVESSSTSNDALLS
ANGSRQMFAGKLPPIRENGHTSKLEPIELRGRLPDIGNHSRQKDGDW

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008618	XLOC_008618	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015424	TCONS_00015424	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006689	Small_GTPase_ARF/SAR
IPR005225	Small_GTP-bd_dom
IPR024156	Small_GTPase_ARF
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007264	small GTPase mediated signal transduction
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005525	GTP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 282..302
None	No IPR available	COILS	Coil	Coil	coord: 434..454
None	No IPR available	COILS	Coil	Coil	coord: 225..245
None	No IPR available	SMART	SM00178	sar_sub_1	coord: 2..190 e-value: 3.4E-16 score: 69.8
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 5..194 e-value: 2.2E-23 score: 93.7
None	No IPR available	GENE3D	3.40.50.300		coord: 5..196 e-value: 4.2E-34 score: 116.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..597
IPR006689	Small GTPase superfamily, ARF/SAR type	PRINTS	PR00328	SAR1GTPBP	coord: 23..46 score: 46.08 coord: 78..103 score: 35.29 coord: 123..144 score: 32.89 coord: 51..75 score: 35.29
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 14..187 e-value: 6.1E-42 score: 142.9
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 20..146 e-value: 5.1E-15 score: 53.6
IPR024156	Small GTPase superfamily, ARF type	PROSITE	PS51417	ARF	coord: 15..190 score: 16.622
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 18..190

Blast

[Close]

BLAST of TCONS_00015424-protein vs. Swiss-Prot (Human)
Match: AR13B (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.558e-76
Identity = 119/281 (42.35%), Postives = 188/281 (66.90%), Query Frame = 0

Query:    1 MVGLMANCFAWLKSKNKPPKDVKLVIIGLDDAGKTTTVACLQGEPPDGITPTVGFSNANLKFGKCNVTLYDLGGGVNVRTVWKKYFAEIYGIIFTIDSCNKDRIEESRDALSEIFQDPKVSGKPILIFANKQDKEGALDVPSIKKKLKIQTLSKKYEFKYNVFPCSAIKGFGNKTDKSIRDGFNWLLSAVNNDYQTIHEKVEHESKIQKEQEAKERKEKWDRIRKERAEREKAAQE-AGVNEDEGENNEDDDDVMSGPFRNINDQIKITEKREKKEKENRK 280
            M  LMA+C  W K   +P + V L+++GLD+AGKT T   +QGE P+ + PTVGFS  NL+ GK  VT++DLGGG+ +R +WK Y+AE YG+IF +DS +++R+EE+++A+SE+ + P++SGKPIL+ ANKQDKEGAL    + + L ++ L  +++    + PCSAI G+G K DKSI+ G  WLL  +  D+  ++E+++ E+  Q+  E +E++E+ +R+RK R ER++  QE A ++   G    D +   + PF+ I   I   E + ++EK+N+K
Sbjct:    1 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAELDGTSGLAELDPEP--TNPFQPIASVIIENEGKLEREKKNQK 279

The following BLAST results are available for this feature:

BLAST of TCONS_00015424-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015424-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AR13B	1.558e-76	42.35	ADP-ribosylation factor-like protein 13B OS=Homo s...	[more]

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TCONS_00015424-protein (polypeptide) - C. hemisphaerica