TCONS_00015584-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015584-protein
Unique NameTCONS_00015584-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015584-protein ID=TCONS_00015584-protein|Name=TCONS_00015584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1187bp
MNEQASMKNRMQDTQQTTELLSIPTTDFHRRLSQDKPVITPTTQQYHCHE
NNVVTPTFTSPGCTCRKLLSRQPHIQRHCGCKEQKNTNKTPSYLDTSDYI
QYCNNLTPAGKTYPQLCLEPHFNNNSRKNSAQSAIMLTDGTEPKVLELNN
NHDNLTEQNGGHERHNGSHSDIQVDEIDLEETYYPEKVFWCLERKSRFRH
WAIRMTLSPYFERITIFVILMNCVTLGLYDPYDEDCKTQRCQILEGFETF
IYAYFVAEMVIKIIASGLLGKQGYLSEGWNRLDCFIVVAGTFELIYGDGE
FLSSVRAVRVLRPLRAINRVPSIRILVTLLLDTLPMLGNVFILCVLILMV
FAIIGVQLWNGILRNRCALTIPDTMPVSLQNTTESLMKYYIPDDSDEWEI
ICPTKDTSSNPELQCLGRIQGLESMVYSMPGCNTTYGPKSNFTELVAKNL
THCIDWNMFYSSCKDFGLNPNFDAISFDNSGVAFIAIFQAMTLEGWVDIM
YYLQDAYSSWVWIYFVALIVLGSYFLTNLCLVVVATQFSETRQRESALME
EARRKARSTSSTIFTSTDTESNKGCYNQLLSIMKHYIQSGCRNLKAKIFG
EKSQQISKRKKKGRHHLLQKNGGGSGRSKQPHSHANGVGGGGNVHYHHHH
HHHIHHHHLHLCNSNSAATQPRGGGLTQPNGDVMNIDGDEERYCPPNALT
GALDASTSPNSKALTKTVGAPLPSTGSQQPAVLSRTTIRPTPPSIIIDEV
PTCDHQSAALIIPETAVVICHSSSLPGALQSQSPLTAVSWFPSFNKLHRS
STAAASENEFDTESWPCRGYRSVGDPACCPDLNKEAYEQGVYEDCDHDSD
YTDDDSDDEYDDQTPSKKSPRKTWINQKQKLIVQFCESDCFKVSIMTAIF
LNTVTMAMEHYRQPSSMTMALEIFNTIFTTVFLIEFVLKFTGYGFYGYIK
NAFNVFDGIVVIISIIELAGSRAGGVSVLRTFRLMRIFKLIRFLPTLQKQ
IQVMLETLDSVMTFLGLLTIFIFTSSILGMHLFGGKMKVDGVVVRHNFDD
LLWSLITVFQVLTQEDWNAVLYDAMRSTTKWASVYFVLLMIIGNYILFNL
LVAILVEGFSSETDGILSTPSKSPMLSKSLSPSTPYQQKNEEDMYYILNG
NANSGRKRNQTQSLPNITDESLYFDRQSGDXEFDTLH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008709XLOC_008709Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015584TCONS_00015584Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 207..543
e-value: 3.3E-56
score: 189.6
coord: 887..1113
e-value: 2.2E-48
score: 164.1
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 473..542
coord: 208..362
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 890..1110
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 209..545
e-value: 9.6E-65
score: 218.1
coord: 890..1113
e-value: 3.2E-54
score: 183.7

Blast
BLAST of TCONS_00015584-protein vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4)

HSP 1 Score: 337.035 bits (863), Expect = 1.672e-95
Identity = 221/493 (44.83%), Postives = 306/493 (62.07%), Query Frame = 0
Query:  188 VFWCLERKSRFRHWAIRMTLSPYFERITIFVILMNCVTLGLYDP-YDEDCKTQRCQILEGFETFIYAYFVAEMVIKIIASGLLGKQGYLSEGWNRLDCFIVVAGTFEL-IYGDGEFLSSVRAVRVLRPLRAINRVPSIRILVTLLLDTLPMLGNVFILCVLILMVFAIIGVQLWNGILRNRCALTIPDTMPVSLQNTTESLMKYYIPDDSDEWEIICPTKDTSSNPELQCLGRIQGLESMVYSMP---GCNTTYGPKSNFTELVAKNLTHCIDWNMFYSSCKDFGLNPNFDAISFDNSGVAFIAIFQAMTLEGWVDIMYYLQDAYSSWVWIYFVALIVLGSYFLTNLCLVVVATQFSETRQRESALMEEARRKARSTSSTIFTSTDTESNKGCYNQLLSIMKHYIQSGCRNLKAKIFGEKSQQISKRKKKGRHHLLQKNGGGSGRSKQPHSHANGVGGGGNVHYHHHHHHHIHHHHLHLCNSNSAATQPRGGG 675
            VF+CL + +R R W +R+  +P+FE +++ VI++NCVTLG++ P  D +C ++RC ILE F+ FI+A+F  EMVIK++A GL G++ YL + WNRLD FIVVAG  E  + G    LS++R VRVLRPLRAINRVPS+RILVTLLLDTLPMLGNV +LC  +  +F I+GVQLW G+LRNRC L   D+  V   N T  L  YY  ++ +E   IC ++  +    +Q    I G   +   MP   G      P++   E V      CI+WN +Y+ C+    NP+  AI+FDN G A+IAIFQ +TLEGWVDIMYY+ DA+S + +IYF+ LI++GS+F+ NLCLVV+ATQFSET+QRES LM E R +  S  ST+ + ++  S   CY +LL  + H      R +K +     ++  S+ +KK     +Q  G G  R ++   H        +VH+  +HHHH HHHH H  + +     P  G 
Sbjct:   79 VFFCLGQTTRPRSWCLRLVCNPWFEHVSMLVIMLNCVTLGMFRPCEDVECGSERCNILEAFDAFIFAFFAVEMVIKMVALGLFGQKCYLGDTWNRLDFFIVVAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFL---DSAFVRNNNLT-FLRPYYQTEEGEENPFICSSRRDNG---MQKCSHIPGRREL--RMPCTLGWEAYTQPQA---EGVGAARNACINWNQYYNVCRSGDSNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRESQLMREQRARHLSNDSTLASFSEPGS---CYEELLKYVGHIF----RKVKRRSLRLYARWQSRWRKKVDPSAVQGQGPGH-RQRRAGRHT------ASVHHLVYHHHHHHHHHYHFSHGSPRRPGPEPGA 545          

HSP 2 Score: 285.034 bits (728), Expect = 1.367e-78
Identity = 143/301 (47.51%), Postives = 193/301 (64.12%), Query Frame = 0
Query:  839 QGVYE---DCDHDSDYTDDDSDDEYDDQTPSKKSPRKT----------------WINQKQKLIVQFCESDCFKVSIMTAIFLNTVTMAMEHYRQPSSMTMALEIFNTIFTTVFLIEFVLKFTGYGFYGYIKNAFNVFDGIVVIISIIELAGSRAGGVSVLRTFRLMRIFKLIRFLPTLQKQIQVMLETLDSVMTFLGLLTIFIFTSSILGMHLFGGKMKV-----DGVVVRHNFDDLLWSLITVFQVLTQEDWNAVLYDAMRSTTKWASVYFVLLMIIGNYILFNLLVAILVEGFSSETDG 1115
            +GVYE   D  H   +         D   P   SP++                 W+    KL  +  +S  F   IM AI +NT++M +E++ QP  +T ALEI N +FT++F +E +LK    G  GYI+N +N+FDGI+V+IS+ E+ G   GG+SVLRTFRL+R+ KL+RFLP L++Q+ V+++T+D+V TF  LL +FIF  SILGMHLFG K  +     D V  R NFD LLW+++TVFQ+LTQEDWN VLY+ M ST+ WA++YFV LM  GNY+LFNLLVAILVEGF +E D 
Sbjct:  725 RGVYEFTQDVRHGDRWDPTRPPRATDTPGPGPGSPQRRAQQRAAPGEPGWMGRLWVTFSGKL-RRIVDSKYFSRGIMMAILVNTLSMGVEYHEQPEELTNALEISNIVFTSMFALEMLLKLLACGPLGYIRNPYNIFDGIIVVISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLVKTMDNVATFCTLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDA 1024          

HSP 3 Score: 104.76 bits (260), Expect = 1.870e-22
Identity = 66/262 (25.19%), Postives = 124/262 (47.33%), Query Frame = 0
Query:  860 YDDQTPSKKSPRKTWINQKQKLIVQFCESDCFKVSIMTAIFLNTVTMAMEHYRQPSSMTMALEIFNTIFTTVFLIEFVLKFTGYGFYGYIKNAFNVFDGIVVIISI-------IELAGS---RAGGVSVLRTFRLMRIFKLIRFLPTLQKQIQVMLETLDSVMTFLGLLTIFIFTSSILGMHLFG-----GKMKVDGVVVRHNFDDLLWSLITVFQVLTQEDWNAVLYDAMRSTTK-----------WASVYFVLLMIIGNY 1095
            Y D +P+++S            I   C S    + I   I +N +TM+MEHY QP S+  AL+  N +FT VF+ E  LK   +GF  + K+ +N  D  +V++S+       IE++ +       + ++R  R+ R+ KL++    ++  +  +++ L  V     L  +  F  + LG+ LFG          +G+     F +   + +T+F+V T ++WN ++ D +R  ++            + VYFV  +++  +
Sbjct: 1600 YADYSPTRRS------------IHSLCTSHYLDLFITFIICVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAALKLVAFGFRRFFKDRWNQLDLAIVLLSLMGITLEEIEMSAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHATFSNFGMAFLTLFRVSTGDNWNGIMKDTLRECSREDKHCLSYLPALSPVYFVTFVLVAQF 1849          

HSP 4 Score: 94.7449 bits (234), Expect = 2.066e-19
Identity = 76/322 (23.60%), Postives = 152/322 (47.20%), Query Frame = 0
Query:  847 HDSDYTDDDSDDEYDDQTPSKKSPRKT-WINQKQK-LIVQFCESDCFKVS-------------IMTAIFLNTVTMAMEH--YRQPSSMTMALEIFNTIFTTVFLIEFVLKFTGYGF----YGYIKNAFNVFDGIVVIISIIEL--AGSRAGGVSVLRTFRLMRIFKL------IRFLPTLQKQIQVMLETLDSVMTFLGLLTIFIFTSSILGMHLFGGKM-KVDG-------------------VVVRHNFDDLLWSLITVFQVLTQEDWNAVLYDAMRST----------TKWASVYFVLLMIIGNYILFNLLVAILVEGF 1109
             D+   DDDS+D    +      P K  W   ++   +  F   + F+VS             ++  IFLN VT+A+E       S+  + L + N IFT +F+ E ++K    G     + Y+++++N+ DG++V++S++++  A + AGG  +L   R++R+ +       I   P L+  ++ ++ +L  +   + +   F     ILG+ LF GK    +G                   V  ++NFD+L  +L+++F + +++ W  ++YD + +             W  +YF+  ++I ++ + N+ V ++VE F
Sbjct: 1237 EDAAELDDDSEDSCCLRLHKVLEPYKPQWCRSREAWALYLFSPQNRFRVSCQKVITHKMFDHVVLVFIFLNCVTIALERPDIDPGSTERVFLSVSNYIFTAIFVAEMMVKVVALGLLSGEHAYLQSSWNLLDGLLVLVSLVDIVVAMASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGPDTRNISTKAQCRAAHYRWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGVDQQPVQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENF 1558          

HSP 5 Score: 92.0485 bits (227), Expect = 1.359e-18
Identity = 59/209 (28.23%), Postives = 104/209 (49.76%), Query Frame = 0
Query:  177 IDLEETYYPEKVFWCLERKS----------RFRHWAIRMTLSPYFERITIFVILMNCVTLGLYDPYDEDCKTQRCQILEGFETFIY-AYFVAEMVIKIIASGLL-GKQGYLSEGWNRLDCFIVVAGTFELIYGDGEFLSSVRAVRVLRPLRA------------INRVPSIRILVTLLLDTLPMLGNVFILCVLILMVFAIIGVQLWNG 361
            + L +   P K  WC  R++          RFR    ++     F+ + +  I +NCVT+ L  P  +   T+R  +      +I+ A FVAEM++K++A GLL G+  YL   WN LD  +V+    +++      ++S    ++L  LR             I+R P ++++V  L+ +L  +GN+ ++C    ++F I+GVQL+ G
Sbjct: 1252 LRLHKVLEPYKPQWCRSREAWALYLFSPQNRFRVSCQKVITHKMFDHVVLVFIFLNCVTIALERPDIDPGSTER--VFLSVSNYIFTAIFVAEMMVKVVALGLLSGEHAYLQSSWNLLDGLLVLVSLVDIVVA----MASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKG 1454          
The following BLAST results are available for this feature:
BLAST of TCONS_00015584-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1H1.672e-9544.83Voltage-dependent T-type calcium channel subunit a... [more]
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