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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00016101-protein ID=TCONS_00016101-protein|Name=TCONS_00016101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=954bp
MDAMMCQMDDLSKVNKQEKMLNNRKQKSRDAARNRRSKENDQYEALAKLL
PLPESISSQLDKASIIRLTIGFLKYKDLIGTGGGMQHNGYRRNMMLMSHN
GHNNNHHPYHPQRAVQKTSVYSDIEQRIGKHIEHALDGFMLTVSDNGHFI
YVSDTIEQFLGLRQIDLIGTSAYDVIHPEDHQTFMELLCSTFQKSNQQYK
MNNMMDFDAMTFMEMERKSKQGFVSLFIRFKCTLAKKGASVSKSAGYKVI
HISGQMIPFKNLDHKGEQMFALVATGHALPPPTICELKLDTKVFVSRVSM
DLKIVFCEGKIRKYMNFTAQDIVGMRAYDFYHLKDSHIVQDAHNDCLKSG
KCRSLAYRWMNKTGGWVWMQTVGTVISRKTAKGEENQILCVNYISSDVEH
EDEMMHSIQLKFKDMGITNKEDDMSDFGNDASTGPADITSDDVRKSYATP
STEEAADKESYLKSIDYHNMTNGHRAIVSDEPVKPNPAVFTHTPNLPPAP
IPARPLVDEETKRRQANIMGDLQLADMLSETGPLPQIDNPFPDSPESYDM
SHCDIISLQGAPQLPNENKNFGSREVFSMSNTMNFHHADNNNSFQIQQTS
TSIYMEQQISPPLPRQTQQQANNSMSPQYQQPHDPIVMNEVNTFFNEMST
ASNNSPYPQHQQQQQQPIQNNANSPQSNDFYNQDLSPKYETPSPEYPAQT
NGGGNCSPPYMAPVGKESPPYLGQSMNSPPMFNNNQQTNAPPPYTSSQYN
APPQYNTQTAPSNRMHFNPQMESPLEFNNFNTIIKTEPPNYMGCGAQYRS
NNMINRGNGMTQQQPLQTQCIPQQQQQRQNQMNNIPQCQGGHFDTNLPNG
GGVLNQGQFNPDIPPIEVLDNLDDIEDIISSCIEQDEIQNQDFQQRLLIQ
QQQEQQLQQQAFVEQQMNFQNQQQNGQLPYNAPLRCNTTIPNKFGGYNNT
NSIF Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0046983 |
protein dimerization activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 890..910 |
| None | No IPR available | GENE3D | 3.30.450.20 | | coord: 117..278
e-value: 2.4E-26
score: 91.6 |
| None | No IPR available | GENE3D | 3.30.450.20 | | coord: 292..930
e-value: 1.1E-19
score: 70.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 648..745 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 611..633 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..41 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 432..455 |
| IPR000014 | PAS domain | SMART | SM00091 | pas_2 | coord: 126..193
e-value: 3.0E-10
score: 50.0
coord: 282..348
e-value: 5.8E-4
score: 29.2 |
| IPR000014 | PAS domain | TIGRFAM | TIGR00229 | TIGR00229 | coord: 132..198
e-value: 5.7E-7
score: 27.7 |
| IPR000014 | PAS domain | PROSITE | PS50112 | PAS | coord: 124..195
score: 16.863 |
| IPR000014 | PAS domain | CDD | cd00130 | PAS | coord: 291..391
e-value: 6.17363E-12
score: 62.6507 |
| IPR000014 | PAS domain | CDD | cd00130 | PAS | coord: 136..188
e-value: 9.05091E-11
score: 59.1839 |
| IPR000014 | PAS domain | SUPERFAMILY | 55785 | PYP-like sensor domain (PAS domain) | coord: 136..196 |
| IPR000014 | PAS domain | SUPERFAMILY | 55785 | PYP-like sensor domain (PAS domain) | coord: 294..379 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | SMART | SM00353 | finulus | coord: 29..84
e-value: 7.9E-7
score: 38.7 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | GENE3D | 4.10.280.10 | | coord: 17..116
e-value: 2.1E-7
score: 30.2 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | PFAM | PF00010 | HLH | coord: 24..75
e-value: 3.2E-5
score: 23.7 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | PROSITE | PS50888 | BHLH | coord: 23..76
score: 14.246 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | CDD | cd00083 | HLH | coord: 23..75
e-value: 1.28953E-9
score: 54.9127 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | SUPERFAMILY | 47459 | HLH, helix-loop-helix DNA-binding domain | coord: 23..75 |
| IPR013767 | PAS fold | PFAM | PF00989 | PAS | coord: 130..188
e-value: 7.1E-8
score: 32.4 |
| IPR013655 | PAS fold-3 | PFAM | PF08447 | PAS_3 | coord: 304..382
e-value: 4.0E-14
score: 52.6 |
Blast
BLAST of TCONS_00016101-protein vs. Swiss-Prot (Human)
Match: NPAS3 (Neuronal PAS domain-containing protein 3 OS=Homo sapiens GN=NPAS3 PE=2 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 2.408e-82 Identity = 161/407 (39.56%), Postives = 232/407 (57.00%), Query Frame = 0
Query: 24 RKQKSRDAARNRRSKENDQYEALAKLLPLPESISSQLDKASIIRLTIGFLKYKDLIGTGGGMQHNGYRRNMMLMSHNGHNNNHHPYHPQRAVQKTSVYSDI-EQRIGKHIEHALDGFMLTVSDNGHFIYVSDTIEQFLGLRQIDLIGTSAYDVIHPEDHQTFMELLCSTF--------QKSNQQYKMNNMMDFDAMTFMEMERKSKQGFV-------SLFIRFKCTLAKKGASVSKSAGYKVIHISGQMIPFKNLDHKG---EQMFALVATGHALPPPTICELKLDTKVFVSRVSMDLKIVFCEGKIRKYMNFTAQDIVGMRAYDFYHLKDSHIVQDAHNDCLKSGKCRSLAYRWMNKTGGWVWMQTVGTV-ISRKTAKGEENQILCVNYISSDVEHEDEMMHSIQL 410
RK+KSRDAAR+RR KEN ++ LAKLLPLP +I+SQLDKASIIRLTI +LK +D G + + M N + QR +++ ++ E +G HI +LDGF+ ++ G F+Y+S+T+ +LGL Q++L G+S +D +HP DH E L Q + + + + T +E S S FIR K TL K+G + KS+GYKVIHI+G++ +L H Q+ LV HALPPPTI E+++D +FV+RV+MDL I++CE +I YM+ T DIVG R Y F H +D ++ +H D L G+C + YRWM K GG++W+Q+ T+ I+ K A E I+ VNY+ S+ E++D M QL
Sbjct: 52 RKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWN-------LRMEGPPPNTSVKVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHI-KSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNAN--EKNIIWVNYLLSNPEYKDTPMDIAQL 448
The following BLAST results are available for this feature:
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