TCONS_00016128-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016128-protein
Unique Name	TCONS_00016128-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1398

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016128-protein ID=TCONS_00016128-protein|Name=TCONS_00016128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1398bp
MQDKPIRGSYQPRPQYVSDSNQMMQAGTAPVRGGLYNFPNNTMQIRGGYS
NGPRMQYQNQQYVQMQQQDVMHQQGYIQNYNQNVYGSSPNYHPQQFQQVY
RPQQPGYPPAPQVYVLQQGATPFQPQVQLQAQQMQQNAQQNIPQQHPQHQ
QQRNVYQTIQPQQAHHSTIQQTQSHQTPESVPKKRTVIKIVDPNSGKDLT
SEIQSRKKTEKQTTPLRSSTQVKISAPATPIPVSQSIPVDSDEKLKQNKA
NAEFAAKVAAQVAARQQQTESPEKKQDKTEETPVQKVEIKSAPVDQVDST
PKEKDIKQETSEVSSTQEVQDTKKEVQKPVEEKTESNEPISETKIEETVP
ETTVPETPKTEEVKTEASEIKTEAKVEPVQEPVKKIEASLNNTEPEATDE
PIVNGHDENKSAFQVAKKKSNKKRLKELDAKQDSTDILSAFTDAPKKEDP
QPVVEPPAPQQPKEDPTWEDKEKTIEKEVIRNEDSEEPEAIKPQQPRVEK
TTIVSTEDEDEEKLQYDRDFLLKFQFNPICTSKPANLPNIDIVLDTAHQP
TKPLVPGQRFTNNDFMPNFMRQSSGGRSSGGGRSSKSDRRGPPSMGGKPQ
KIIQLPQFEKLELKRSENAWVRPSDQDKDLPEELKVMKELERNVRAILNK
LTPQKFKELVDKMTNLKIDSVSKLQMAIDLIFEKAISEPGFSVAYANMCR
VLTDAFKSVPGDKSNTNFRKILLNKCQKEFEKEKQDDIQMEQDRSKTFDT
EKEMKEWKEELDYKEMINRRRTLGNIRFIGELFKLKMISEKIMHECILKL
IRVSKPDSMEDHLECLCKLLSTVGKQLDHEEAKPRMDQYFQQIEKIIEKK
KISSRIKFALKDVIDLRANHWVPRRDEGNPKTIDQIAREAQQKAKEEEMY
RQQEKLKPREPRGRVGGRDSPSVRNPTSADGWTNVPSKATRGFGPTVDAS
KFKIQKKNDSSDISLGPGGRPGAWSKGASGGSSSRSGSGSNTPTNEIEQK
GNRFDLLSGSSDTPAPLDNRRGGSRPNSGMRKTSQGTGRRGDERNAALRA
VRDLTSGSNSRNQSPSRAGDSAINSPVSGSQTPVEASLSPTSPPAVDEDK
MRKKTKSTIEEFFGVLDYKEAMLCLKELDAPHLHWAFVEEAIVIASEMKP
QNRVNAGKLFCRMVKDNLIKFAEFQKGMSSVIEIAPDMAVDIPRFYAYMG
EILGPMIAEPSVLPLQEMKKLLEPLVYNSKAGVILAEALNTGCKEIADEQ
TIAGIWKESGLSWSSLLESGRNIDEFVQDHKLQYLMKTSSSSSTSHASQI
QQELLLMLNTKNNEDKVIAFIDEKIPSKERATPEFICTLTDAVCRSSLTD
EGSECKCNKEALSGKKRILLKYIDGNKISELHAAFALQSLATDLNHPR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009014	XLOC_009014	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016128	TCONS_00016128	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003891	Initiation_fac_eIF4g_MI
IPR003890	MIF4G-like_typ-3
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003723	RNA binding
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 883..906
None	No IPR available	GENE3D	1.25.40.180		coord: 1297..1398 e-value: 7.6E-7 score: 28.9
None	No IPR available	GENE3D	1.25.40.180		coord: 1092..1296 e-value: 2.7E-46 score: 157.0
None	No IPR available	GENE3D	1.25.40.180		coord: 637..898 e-value: 1.9E-74 score: 249.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 553..602
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 891..1103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..512
IPR003891	Initiation factor eIF-4 gamma, MA3	SMART	SM00544	ma3_7	coord: 1101..1213 e-value: 5.4E-20 score: 82.4
IPR003891	Initiation factor eIF-4 gamma, MA3	PFAM	PF02847	MA3	coord: 1102..1209 e-value: 6.3E-18 score: 64.7
IPR003891	Initiation factor eIF-4 gamma, MA3	PROSITE	PS51366	MI	coord: 1100..1222 score: 17.709
IPR003890	MIF4G-like, type 3	SMART	SM00543	if4_15	coord: 641..870 e-value: 2.7E-58 score: 209.6
IPR003890	MIF4G-like, type 3	PFAM	PF02854	MIF4G	coord: 641..870 e-value: 5.2E-59 score: 199.4
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 636..873
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 1094..1286
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 1299..1397

Blast

[Close]

BLAST of TCONS_00016128-protein vs. Swiss-Prot (Human)
Match: IF4G3 (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2)

HSP 1 Score: 528.094 bits (1359), Expect = 7.976e-162
Identity = 348/939 (37.06%), Postives = 527/939 (56.12%), Query Frame = 0

Query:  511 EEKLQYDRDFLLKFQFNPICTSKPANLPNI-DIVLDTAHQPTKP---LVPGQRFTNNDFMP---NFMRQSSGGRSSGGGRSSKSDRRGPPSMGGKPQKIIQLPQFEKLELKRSENAWVRPS---DQDKDLPEELKVMKELERNVRAILNKLTPQKFKELVDKMTNLKIDSVSKLQMAIDLIFEKAISEPGFSVAYANMCRVLTDAFKSVPGDK--SNTNFRKILLNKCQKEFEKEKQDD--IQMEQDRSKTFDTEKEMKEWKEELDYKEMINRRRTLGNIRFIGELFKLKMISEKIMHECILKLIRVSKPDSMEDHLECLCKLLSTVGKQLDHEEAKPRMDQYFQQIEKIIEKKKISSRIKFALKDVIDLRANHWVPRRDEGNPKTIDQIAREAQQKAKEEEMYRQQEKLKPREPRGRVGGRDSPSVRNPTSADGWTNV-PSKATRGFGPTVDASKF-KIQKKNDSSDISLGPGGRPGAWSKGASGGSSSRSGSGSNTPTNEIEQKGNRFDLL-----SGSS-DTPAPLDNRR-------------------GGSRPNSGMRKTSQ----GTGRRGDERNAALRAVRDLTSGSNSRNQSPSRAGDSAINSPVSGSQTPVEASLSPTSPPAVDEDKMRKKTKSTIEEFFGVLDYKEAMLCLKELDAPHLHWAFVEEAIVIASEMKPQNRVNAGKLFCRMVKDNLIKFAEFQKGMSSVIEIAPDMAVDIPRFYAYMGEILGPMIAEPSVLPLQEMKKLLEPLVYNSKAGVILAEALNTGCKEIADEQTIAGIWKESGLSWSSLLESGRNIDEFVQDHKLQYLMKTSSSSSTS------HASQIQQEL-LLMLNTKNNEDKVIAFIDEKIPSKERATPEFICTLTDAVCRSSLTDEGSECKCNKEALSGKKRILLKYIDGNKISELHAAFALQSLATDLNHP 1397
            E K QYDR+FLL FQF P C  KP  LP I D+VLD  +QP  P   L P       DF P   +F RQ+ GGR  G    +   RR  P    +P+KII +   E + LK++ENAW +PS   D   D PE +K  +EL R VR+ILNKLTPQ F +L+ +++ L +D+  +L+  IDL+FEKAI EP FSVAYANMCR L    K    DK  +  NFRK+LLN+CQKEFEK+K DD   + +Q   +     +E     +EL+  +   RRR++GNI+FIGELFKLKM++E IMH+C++KL++    +  E+ LECLC+LL+T+GK LD E+AKPRMDQYF Q+EKI++++K SSRI+F L+DVIDLR  +WV RR +  PKTI+QI +EA  K +E+E  R+ ++L  +E R        P V+      GW  V  +K +R     +D SKF KI K      I L P  + G+W KG+SGG+ +       +  + +    NRF  L     SGS+  TP   D+RR                     +RPN+ MR  S         + ++R   L  V+ LT G +       R    A  +    S  P  +++S     A+ E+++ +K+KS I+EF  + D+KEAM C++EL+A  L   FV   +    E     R + G+L  ++V+   +   +F KG S  +E+A DMA+DIP  + Y+ E++ PM+ E  +   +   +  +PL+   +AGV+L+E L+  CK+++ ++ +  +W+E+ LSW   L  G ++  F+ + KL ++   S  SS +       A ++ + L  L++  K N++++  +++  +   + ++P F+  L  AVC++++  + S  + +   +  +  ILLKY+D +   EL A +ALQ+    L+ P
Sbjct:  619 EGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQTPGGR--GVPLLNVGSRRSQPGQRREPRKIITVSVKEDVHLKKAENAW-KPSQKRDSQADDPENIKT-QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLV-TLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLK----NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA--KIEEQEEQRKVQQLMTKEKR-------RPGVQR-VDEGGWNTVQGAKNSR----VLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSL----NRFSALQPPAPSGSTPSTPVEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGVDVE-----RNSTEAERNKTRESAKPEISAMSAHDKAALSEEELERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELTIEFSKPLLPVGRAGVLLSEILHLLCKQMSHKK-VGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSPCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDEIQMSSPTFLRALMTAVCKAAIIADSSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQP 1524

The following BLAST results are available for this feature:

BLAST of TCONS_00016128-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016128-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IF4G3	7.976e-162	37.06	Eukaryotic translation initiation factor 4 gamma 3...	[more]

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TCONS_00016128-protein (polypeptide) - C. hemisphaerica