TCONS_00016188-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016188-protein
Unique NameTCONS_00016188-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016188-protein ID=TCONS_00016188-protein|Name=TCONS_00016188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MIERILKGIKTMDALQAVDKEEKRLRTKIESCQKNLNKYLDGLIEHVQTL
RNDFAEENGMEDTLQGLPLHSLAAASKRVKEETNKVALEHKELHAYVSKV
GKSIDRNFTSEFGGTTQEDIFSGDARDLLNEAIVEHLMRQGQEETANKLI
EESELSLPPNSEYAFNEINTILNAFREKNIEPALSWAVSHHEELKSMHSE
LEFKLHKLKFLTLLRSGFFKEALYYSRKLSAFDGHLKEIQSLMACFAFMK
TGMEKSPYADLFDDSLWVETSDLLAKDACALLGLPKCSPLEVSVSVGCTA
LPSLLQIRQVMQQRQVEGMWSAKEELPVEIDLDNEFRFHSIFACPILRQQ
CGRTNPPMRLVCGHVISKDALQRLSNSNKLKCPYCPKEMDPRDAKRIYF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009048XLOC_009048Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016188TCONS_00016188Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006595CTLH_C
IPR013144CRA_dom
IPR006594LisH
IPR013083Znf_RING/FYVE/PHD
IPR024964CTLH/CRA
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 338..398
IPR006595CTLH, C-terminal LisH motifSMARTSM00668ctlhcoord: 164..221
e-value: 4.3E-9
score: 46.2
IPR006595CTLH, C-terminal LisH motifPROSITEPS50897CTLHcoord: 164..221
score: 11.635
IPR013144CRA domainSMARTSM00757toby_final6coord: 217..310
e-value: 8.6E-16
score: 68.5
IPR006594LIS1 homology motifSMARTSM00667Lishcoord: 125..157
e-value: 0.0019
score: 27.4
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 125..157
score: 9.419
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 333..397
e-value: 2.9E-6
score: 26.1
IPR024964CTLH/CRA C-terminal to LisH motif domainPFAMPF10607CLTHcoord: 165..304
e-value: 4.8E-32
score: 110.8

Blast
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BLAST of TCONS_00016188-protein vs. Swiss-Prot (Human)
Match: RMD5A (Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 4.843e-120
Identity = 172/391 (43.99%), Postives = 252/391 (64.45%), Query Frame = 0 
Query:   12 MDALQAVDKEEKRLRTKIESCQKNLNKYLDGLIEHVQTLRNDFAEENGMEDTLQGLPLHSLAAASKRVKEETNKVALEHKELHAYVSKVGKSIDRNFTSEFGGTTQEDIFSGDARDLLNEAIVEHLMRQGQEETANKLIEESELSLPPNSEYAFNEINTILNAFREKNIEPALSWAVSHHEELKSMHSELEFKLHKLKFLTLLRSGFF--KEALYYSRKLSAFD-GHLKEIQSLMACFAFMKTGMEKSPYADLFDDSLWVETSDLLAKDACALLGLPKCSPLEVSVSVGCTALPSLLQIRQVMQQRQVEGMWSAKEELPVEIDLDNEFRFHSIFACPILRQQCGRTNPPMRLVCGHVISKDALQRLSNSNKLKCPYCPKEMDPRDAKRIYF 399
            MD    V++E +++  K     +   + L+ LI++   L+++  + +G +  L G     L    KR+K+   K+A +HK++H+ VS+VGK+ID+NF S+      +  +  D++ LLNE +VEH  RQG  + A +L +ES LS+ P+ +  F E+N IL A + + + PAL WAVS+ E L + +S LEFKLH+L F++LL  G    +EAL Y++    F   H K+IQ LM    +++ G+E SPY  L D + W +  D+  +DACALLGL   SPL VS S GC ALP+L+ I+ V++QRQ  G+W+ K+ELP+E+DL  +  +HSIFACPILRQQ    NPPM+LVCGH+IS+DAL ++ N +KLKCPYCP E  P DAK+I+F
Sbjct:    1 MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLVLTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF 391
The following BLAST results are available for this feature:
BLAST of TCONS_00016188-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RMD5A4.843e-12043.99Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A P... [more]
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