TCONS_00016486-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016486-protein
Unique NameTCONS_00016486-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length100

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016486-protein ID=TCONS_00016486-protein|Name=TCONS_00016486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MAAGEGEMHTVMEPLDLIKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMV
LGDVEETVTTVELDEETMEEIFKQSKRSIPMLFIRGDGVILISPSLRVGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009209XLOC_009209Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016486TCONS_00016486Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR034105Lsm3
IPR010920LSM_dom
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000956nuclear-transcribed mRNA catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 16..94
e-value: 9.1E-23
score: 91.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 18..94
e-value: 6.6E-22
score: 76.9
NoneNo IPR availableGENE3D2.30.30.100coord: 6..95
e-value: 1.0E-25
score: 88.8
IPR034105Sm-like protein Lsm3CDDcd01730LSm3coord: 13..94
e-value: 3.58591E-52
score: 159.313
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 10..94

Blast
[Close]
BLAST of TCONS_00016486-protein vs. Swiss-Prot (Human)
Match: LSM3 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.074e-52
Identity = 71/91 (78.02%), Postives = 86/91 (94.51%), Query Frame = 0 
Query:    9 HTVMEPLDLIKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEETVTTVELDEETMEEIFKQSKRSIPMLFIRGDGVILISPSLRVG 99
            +TV EPLDLI+ SLDE++YVKMRNDRELRG+LHAYDQHLNM+LGDVEETVTT+E+DEET EEI+K +KR+IPMLF+RGDGV+L++P LRVG
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
The following BLAST results are available for this feature:
BLAST of TCONS_00016486-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM32.074e-5278.02U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
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