TCONS_00016548-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016548-protein
Unique NameTCONS_00016548-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016548-protein ID=TCONS_00016548-protein|Name=TCONS_00016548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MADDGEQIARFISLTNADDERARFYLNAANGDLNTAVATFFDSSANDGED
IAPSVMETEDAPPAAAAAEIPDPRKSMPSKRGNKGNSRITTLASYNQSNS
DSDDEEGQAFFAGGSETSGQQILGPNKKKKNADLKQNIFDAAKSHGAEVV
TDEPSRQPRAQRSVFQGAGFTLGSNVDESKQIGTSVSNTAKADKPRTIVI
KFWQNGFSIDDGPLRNPQDPVNSQFMEDIKRGQVPAELRQHARGEEVHVN
MEDHSHEDYVKPKETFKAFVGSGNTLGSPTPNVAESSLPATTLPPAPTTT
LPQQPAFXMLLKAPSLLLLYHQLLPQPFLNSLHLKLMKANQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009246XLOC_009246Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016548TCONS_00016548Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012989SEP_domain
IPR009060UBA-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012989SEP domainSMARTSM00553faf_3coord: 192..286
e-value: 2.4E-38
score: 143.4
IPR012989SEP domainPFAMPF08059SEPcoord: 200..274
e-value: 4.6E-28
score: 97.5
IPR012989SEP domainPROSITEPS51399SEPcoord: 195..260
score: 34.038
IPR012989SEP domainSUPERFAMILY102848NSFL1 (p97 ATPase) cofactor p47, SEP domaincoord: 188..284
NoneNo IPR availableGENE3D1.10.8.10coord: 2..88
e-value: 7.9E-13
score: 48.0
NoneNo IPR availablePFAMPF14555UBA_4coord: 6..45
e-value: 1.5E-14
score: 53.4
NoneNo IPR availableCDDcd14348UBA_p47coord: 6..43
e-value: 1.63323E-12
score: 60.2449
IPR009060UBA-likeSUPERFAMILY46934UBA-likecoord: 4..43

Blast
[Close]
BLAST of TCONS_00016548-protein vs. Swiss-Prot (Human)
Match: NSF1C (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.342e-58
Identity = 120/296 (40.54%), Postives = 179/296 (60.47%), Query Frame = 0 
Query:    2 ADDGEQIARFISLTNADDERARFYLNAANGDLNTAVATFFDSSANDGEDIAPSVMETEDAPPAAAAAEIPDPRKSMPSKRGNKGNSRITTLASY-NQSNSDSDDEEGQAFFAGGSETSGQQILGPNKKKKNADLKQNIFDAAKSHGA---EVVTDEP--SRQPRAQRSVFQGAGFTLGSN-VDESKQIGTSVSNTAKADKPRTIVIKFWQNGFSIDDGPLRNPQDPVNSQFMEDIKRGQVPAELRQHARGEEVHVNMEDHSHEDYVKPKETFKAFVGSGNTLGSPTPNVAESSLPA 290
            A+  E +  F+++T A+++RARF+L +A  DL  A+A+F++    DG D    ++    A P++ +      R + PS      ++R+T+     +  + D ++EEGQ F+AGGSE SGQQI+GP +KK   +L  ++F  AK HGA   E VT  P  + +PR     F G G+ LG+   +ES  +       +  D    +V+K W++GFS+D+G LR+ QDP N+QF+E I+RG+VPAELR+ A G +V+++MEDH  ED+VKPK  FKAF G G  LGS  P V  +S PA
Sbjct:    3 AERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE----DGGD--EDIVTISQATPSSVS------RGTAPS------DNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRP----FAGGGYRLGAAPEEESAYVAGEKRQHSSQDV--HVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPA 274
The following BLAST results are available for this feature:
BLAST of TCONS_00016548-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSF1C1.342e-5840.54NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
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