TCONS_00016646-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016646-protein
Unique NameTCONS_00016646-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016646-protein ID=TCONS_00016646-protein|Name=TCONS_00016646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
GLFTTFCRGSVVWVFTIYIQKGFQKPLELADNKNNTMADTEIKYTDEGRI
KLYVGSLPFDTRGPDLHEMFSKYGNCSNANVVMEREDETRSRGFGFVEFD
TLDEATAAIEGLNETKLGHRNIMVQHAGKPASGKPPQRRGGGRGGGRGFG
GRGGGFNNRGSRGGFGDRGGSRGGSRGGYNNRGSGGRGGQRGSYGGSQGG
GYNQGGYNQGGYGGYNQGGGYDQSGGYGGGYNQGYSQSGYNQGGSYGQQA
GGNQNQGRSDWY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009309XLOC_009309Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016646TCONS_00016646Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 51..125
e-value: 8.0E-22
score: 88.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 52..122
e-value: 1.5E-18
score: 66.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 50..129
score: 17.813
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 46..159
NoneNo IPR availableGENE3D3.30.70.330coord: 20..153
e-value: 4.9E-24
score: 84.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..262

Blast
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BLAST of TCONS_00016646-protein vs. Swiss-Prot (Human)
Match: CIRBP (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.622e-18
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 0 
Query:   45 TDEGRIKLYVGSLPFDTRGPDLHEMFSKYGNCSNANVVMEREDETRSRGFGFVEFDTLDEATAAIEGLNETKLGHRNIMVQHAGKPASGKPPQRRGG 141
            +DEG  KL+VG L FDT    L ++FSKYG  S   VV +RE + RSRGFGFV F+ +D+A  A+  +N   +  R I V  AGK +  +    RGG
Sbjct:    3 SDEG--KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
The following BLAST results are available for this feature:
BLAST of TCONS_00016646-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CIRBP5.622e-1845.36Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
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