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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00016751-protein ID=TCONS_00016751-protein|Name=TCONS_00016751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
TKSKIKIKMTSQESTSFHGNQQIKSEGMPTSASQPTAPPPSSSSSRDMKI
NKPNYSIKFTLSGHTKAISSVKFSPNGEWLATASADKLIKIWGAHDGKFE
KTIAGHKLGISDVAWSADSNLIVSASDDKTLKVWSLVTGKCLKTLKGHSN
YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVDFN
RDGALIVSSSYDGLCRIWDTASGQCLKTLIDDENPPVSYVRFSPNGKYIL
AATLDNTLKLWDFSKGKCLKTYTGHKNSLYCIFANFSVTGGKWIISGSED
NLVYIWNLQTKEIVQTLEGHSDVVLCCACHPTENIIASGALENDKTVKIW
KSDT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 164..178
score: 39.26
coord: 122..136
score: 38.72
coord: 294..308
score: 33.58 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40_4 | coord: 138..177
e-value: 1.0E-12
score: 58.3
coord: 222..262
e-value: 7.7E-7
score: 38.7
coord: 265..307
e-value: 1.3E-4
score: 31.3
coord: 96..135
e-value: 9.6E-10
score: 48.4
coord: 54..93
e-value: 2.4E-10
score: 50.4
coord: 180..219
e-value: 5.5E-12
score: 55.8
coord: 310..351
e-value: 7.6E-7
score: 38.8 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 139..177
e-value: 5.1E-10
score: 39.7
coord: 223..262
e-value: 6.2E-5
score: 23.6
coord: 181..219
e-value: 1.1E-9
score: 38.7
coord: 313..351
e-value: 2.3E-6
score: 28.1
coord: 59..92
e-value: 3.4E-9
score: 37.1
coord: 266..307
e-value: 1.7E-6
score: 28.5
coord: 100..135
e-value: 4.4E-7
score: 30.4 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 103..144
score: 16.123 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 145..186
score: 18.128 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 272..316
score: 11.511 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 187..228
score: 15.956 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 61..102
score: 16.29 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 230..271
score: 14.017 |
| None | No IPR available | PIRSF | PIRSF002394 | GNBP_B | coord: 1..353
e-value: 3.4E-92
score: 306.8 |
| None | No IPR available | GENE3D | 1.10.10.670 | | coord: 219..273
e-value: 6.6E-20
score: 70.4
coord: 133..157
e-value: 2.0E-17
score: 62.4
coord: 304..354
e-value: 7.6E-18
score: 63.7 |
| None | No IPR available | GENE3D | 2.40.50.140 | | coord: 180..218
e-value: 2.8E-22
score: 77.6
coord: 98..132
e-value: 1.2E-16
score: 59.6 |
| None | No IPR available | GENE3D | 2.80.10.50 | | coord: 158..179
e-value: 1.3E-18
score: 66.9
coord: 56..97
e-value: 3.0E-15
score: 56.0 |
| None | No IPR available | GENE3D | 2.40.10.120 | | coord: 274..303
e-value: 0.041
score: 12.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..49 |
| None | No IPR available | CDD | cd00200 | WD40 | coord: 58..351
e-value: 2.84217E-105
score: 312.732 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 294..308 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 206..220 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 249..263 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 164..178 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 61..354
score: 74.032 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 52..351 |
Blast
BLAST of TCONS_00016751-protein vs. Swiss-Prot (Human)
Match: WDR5 (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1) HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0 Identity = 276/329 (83.89%), Postives = 305/329 (92.71%), Query Frame = 0
Query: 26 EGMPTSASQPTAPPPSSSSSRDMKIN-KPNYSIKFTLSGHTKAISSVKFSPNGEWLATASADKLIKIWGAHDGKFEKTIAGHKLGISDVAWSADSNLIVSASDDKTLKVWSLVTGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVDFNRDGALIVSSSYDGLCRIWDTASGQCLKTLIDDENPPVSYVRFSPNGKYILAATLDNTLKLWDFSKGKCLKTYTGHKNSLYCIFANFSVTGGKWIISGSEDNLVYIWNLQTKEIVQTLEGHSDVVLCCACHPTENIIASGALENDKTVKIWKSD 353
E P + + P PSSS+++ KPNY++KFTL+GHTKA+SSVKFSPNGEWLA++SADKLIKIWGA+DGKFEKTI+GHKLGISDVAWS+DSNL+VSASDDKTLK+W + +GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV FNRDG+LIVSSSYDGLCRIWDTASGQCLKTLIDD+NPPVS+V+FSPNGKYILAATLDNTLKLWD+SKGKCLKTYTGHKN YCIFANFSVTGGKWI+SGSEDNLVYIWNLQTKEIVQ L+GH+DVV+ ACHPTENIIAS ALENDKT+K+WKSD
Sbjct: 5 EKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
The following BLAST results are available for this feature:
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