TCONS_00016934-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016934-protein
Unique NameTCONS_00016934-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016934-protein ID=TCONS_00016934-protein|Name=TCONS_00016934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MIRREVRLRKEYLYRKSLEDQKRSIQEKKQKLKNALDEGKAIPTELRKDE
VELRKLLAYDEKEQDAFTDHFDDEYRWAGVEDPKLMITTSHNPSSKLKLF
AKEIKLILPNSQRLNRGNFVLGQLVSACKANDVTDLIIIHEHRGEPDGMV
ISHLPFGPTAYFSLSNTVLRHDIPNVGKMSEVFPHLIFHNFKTKLGQRVQ
SILKYLFPVPKEDSKRILTFANKDDYISFRHHTYKRNDGKEIVMSEVGPR
FEMKLHEIKLGTLDQSEADTEWKLKPYMNTSLKRKHLGDDTAE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009485XLOC_009485Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016934TCONS_00016934Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007109Brix
IPR004154Anticodon-bd
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..42
NoneNo IPR availableGENE3D3.40.50.10480coord: 82..255
e-value: 6.7E-55
score: 185.2
IPR007109Brix domainSMARTSM00879Brix_2coord: 86..258
e-value: 4.2E-56
score: 202.4
IPR007109Brix domainPFAMPF04427Brixcoord: 91..255
e-value: 7.4E-29
score: 101.1
IPR007109Brix domainPROSITEPS50833BRIXcoord: 83..264
score: 45.701
IPR004154Anticodon-bindingSUPERFAMILY52954Class II aaRS ABD-relatedcoord: 82..261

Blast
[Close]
BLAST of TCONS_00016934-protein vs. Swiss-Prot (Human)
Match: IMP4 (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 8.391e-133
Identity = 167/280 (59.64%), Postives = 223/280 (79.64%), Query Frame = 0 
Query:   12 YLYRKSLEDQKRSIQEKKQKLKNALDEGKAIPTELRKDEVELRKLLAYDEKEQDAFTDHFDDEYRWAGVEDPKLMITTSHNPSSKLKLFAKEIKLILPNSQRLNRGNFVLGQLVSACKANDVTDLIIIHEHRGEPDGMVISHLPFGPTAYFSLSNTVLRHDIPNVGKMSEVFPHLIFHNFKTKLGQRVQSILKYLFPVPKEDSKRILTFANKDDYISFRHHTYKRNDGKEIVMSEVGPRFEMKLHEIKLGTLDQ-SEADTEWKLKPYMNTSLKRKHLGDD 290
            YLYRK+ E+ +RS QE+K++L+ AL+E + IPTELR++ + L+  L +D+   +  T H DDEYRWAGVEDPK+MITTS +PSS+LK+FAKE+KL+ P +QR+NRG   +G LV ACKAN VTDL+++HEHRG P G+++SHLPFGPTAYF+L N V+RHDIP++G MSE  PHLI H F ++LG+RV  IL+YLFPVPK+DS R++TFAN+DDYISFRHH YK+ D + + ++EVGPRFE+KL+ I+LGTL+Q + AD EW+  PY NT+ KR  L  +
Sbjct:   12 YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 291
The following BLAST results are available for this feature:
BLAST of TCONS_00016934-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMP48.391e-13359.64U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
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