TCONS_00017218-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017218-protein
Unique NameTCONS_00017218-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017218-protein ID=TCONS_00017218-protein|Name=TCONS_00017218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=891bp
MIRKMKTIGGKKSFNNNKNNKTQEDKGEGTFRKNKFTARGGGAGGRGGGA
GGRGGGGKGRKFLSKKKQQEEEDEGKFEVVEQNNSQKESMKNIKGSETQE
DDEGETNIRELVKTQNSKQKKSGGFQSMGLSYNIFKGITRKGYKVPTPIQ
RKTIPVIMDGKDVVAMARTGSGKTAAFLIPMFEKLQAHSTNGARSVILSP
TRELAVQTLKFAKELGKFMDLKISLILGGDSMENQFAAFHQNPDVLIATP
GRFLHLLVEMDIKRLDHIEYVVFDEADRLFEMGFAEQLNEIIRRIPESRQ
TLLFSATLPKVLVDFTSAGLTDPTLIRLDVDTKISDKLKMAFFNVRPEDK
IGFLLHLLQNKIDSKEQTVIFAATKHHVEFLNELLSKSGISTTYIYSSLD
QTARKINIANFRKKASMVLVVTDIAARGIDIPMLDNVINFDFPSKPKIFV
HRVGRVARAGRSGTAYSFVMKDELAFLIDLHLFLGRPLKTATATMAEDAD
DVLGAIPQSLIAPEVEYTNRLSTADFTLVSLRKVMTNGYKQYIKSREPAS
DESIRRSKDMNQTVFQNHPLFRGEAAQGDSEDLTKLLYNLQKFKPKNTVF
ETMNTKKSKDTEAIMKEKRKQHCDVIERAKLKVQEKEKEMEETSAKGERT
HTVDNDDYIAETFQTKSFKDRENFIPRQASDFHGERGFTVKSFDKDAQSL
SMDLKADDGEKIKKQQNAKKWDRKRKKFVTVGGNDKVKKIKTESGSYIKA
SYKSNRYGDWMKQNKFSGLTARENPDEMEGQVDKLVQGNKFSRKRKFGNQ
PQQGGQTAGGPSKKRKKGVLKSKDEMVKNRLNDMRKKSFEKSKNDRAGGS
SSRGGRKSGGFSSRGGGRGGRGGGRGGGRGGGRGGRGGKRK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009636XLOC_009636Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017218TCONS_00017218Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012541DBP10_C
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003723RNA binding
GO:0004004ATP-dependent RNA helicase activity
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0004004 ATP-dependent RNA helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 619..646
NoneNo IPR availableGENE3D3.40.50.300coord: 337..880
e-value: 2.5E-45
score: 154.3
NoneNo IPR availableGENE3D3.40.50.300coord: 57..322
e-value: 5.9E-60
score: 202.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 768..891
NoneNo IPR availableCDDcd00268DEADccoord: 125..327
e-value: 2.65121E-87
score: 277.444
NoneNo IPR availableCDDcd00079HELICccoord: 342..468
e-value: 6.30119E-33
score: 123.887
IPR012541DBP10, C-terminalSMARTSM01123DBP10CT_2coord: 703..764
e-value: 1.3E-19
score: 81.2
IPR012541DBP10, C-terminalPFAMPF08147DBP10CTcoord: 703..762
e-value: 3.7E-16
score: 59.0
IPR012541DBP10, C-terminalPRODOMPD024971coord: 683..774
e-value: 3.0E-9
score: 155.0
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 142..342
e-value: 3.8E-57
score: 205.8
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 154..326
score: 32.389
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 379..460
e-value: 3.1E-25
score: 99.8
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 349..460
e-value: 8.1E-25
score: 87.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 357..503
score: 18.65
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 147..311
e-value: 6.0E-49
score: 166.1
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 272..280
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 123..151
score: 10.081
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 191..479

Blast
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BLAST of TCONS_00017218-protein vs. Swiss-Prot (Human)
Match: DDX54 (ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2)

HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 312/571 (54.64%), Postives = 407/571 (71.28%), Query Frame = 0 
Query:   71 EEDEGKFEVVEQNNSQKE------SMKNIKGSETQEDDEGETNIRELVKTQNSKQKKSGGFQSMGLSYNIFKGITRKGYKVPTPIQRKTIPVIMDGKDVVAMARTGSGKTAAFLIPMFEKLQAHST-NGARSVILSPTRELAVQTLKFAKELGKFMDLKISLILGGDSMENQFAAFHQNPDVLIATPGRFLHLLVEMDIKRLDHIEYVVFDEADRLFEMGFAEQLNEIIRRIPESRQTLLFSATLPKVLVDFTSAGLTDPTLIRLDVDTKISDKLKMAFFNVRPEDKIGFLLHLLQNKIDSKEQTVIFAATKHHVEFLNELLSKSGISTTYIYSSLDQTARKINIANFRKKASMVLVVTDIAARGIDIPMLDNVINFDFPSKPKIFVHRVGRVARAGRSGTAYSFVMKDELAFLIDLHLFLG------RPLKTATATMAEDADDVLGAIPQSLIAPEVEYTNRLSTADFTLVSLRKVMTNGYKQYIKSREPASDESIRRSKDMNQTVFQNHPLFRGEAAQGDSEDLTKLLYNLQKFKPKNTVFETMNTKKSKDTEAIMKEKRKQHCDVIER 628
            + ++G+FE+  +++++         +     SE   D E +T  RE+V+ QN K+KKSGGFQSMGLSY +FKGI +KGYKVPTPIQRKTIPVI+DGKDVVAMARTGSGKTA FL+PMFE+L+ HS   GAR++ILSPTRELA+QTLKF KELGKF  LK +LILGGD ME+QFAA H+NPD++IATPGR +H+ VEM +K L  +EYVVFDEADRLFEMGFAEQL EII R+P   QT+LFSATLPK+LV+F  AGLT+P LIRLDVDTK++++LK +FF VR + K   LLHLL N +  ++QTV+F ATKHH E+L ELL+   +S  +IYS+LD TARKIN+A F       L+VTD+AARG+DIP+LDNVIN+ FP+K K+F+HRVGRVARAGRSGTAYS V  DE+ +L+DLHLFLG      RPLK  +       D +LG +PQS++  E         A   L  L +V  N  +QY++SR   S ESI+R+K+M+      HPLF     + + + L +L+ +++ ++ + T+FE +N         +M+ KR++    I R
Sbjct:   40 DSEDGEFEIQAEDDARARKLGPGRPLPTFPTSECTSDVEPDT--REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLK-LQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGVAG--VDGMLGRVPQSVVDEEDSGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRFEEEELQRL-RLVDSIKNYRSRATIFE-INASSRDLCSQVMRAKRQKDRKAIAR 603
The following BLAST results are available for this feature:
BLAST of TCONS_00017218-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX540.000e+054.64ATP-dependent RNA helicase DDX54 OS=Homo sapiens G... [more]
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