TCONS_00017436-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017436-protein
Unique Name	TCONS_00017436-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	529

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017436-protein ID=TCONS_00017436-protein|Name=TCONS_00017436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MEASPSKRIHKEVSLQTKYMALLELESGKTNKEVCLMFEVPSNTISTWKK
NKSKIFEALRNGSPASKRLRVDKFDQINKAVLQWFHQMQLDNVIINRPMV
REKALSFAKEMGVENFHASNGWLEKWKKRYNVSFKTASEAAKAERDGMMP
PSIEATLPMLLSRYTLKDIFNAKEFGLFYQCLPGTISHLAEENCADGKHS
SSRLTVVAVANAFGERMEIFVIGKPANPSSSEDVKNIPCRYRSQRKSWMD
SSLFEEWVRELDTKFGESGRKVALIVSDSSAHPDIDGLQWVELIFIPPKT
DSMTQPMDQGIVKYLKTKFRSLQVKKQILDCEKFNELSKLSIPAIMAMLL
QAWLSIPAIMAMLLQAWHSIPFQTFTSSFKKAGLLIEATERISNDHDDEF
VITILNELEANLLLLKEKFGLDYKLTAEQLINIDSQVSVTGTLSDADIIA
GVYGNSVDLSDDEPDQPQLEEKIVLRPSKNSVSNAIKTLEDYSVFSKFGT
DIITALKQIQRAVDLDNQLINSGSKKIEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009758	XLOC_009758	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017436	TCONS_00017436	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006600	HTH_CenpB_DNA-bd_dom
IPR004875	DDE_SF_endonuclease_dom
IPR009057	Homeobox-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006600	HTH CenpB-type DNA-binding domain	SMART	SM00674	cenpb	coord: 71..136 e-value: 5.8E-19 score: 79.0
IPR006600	HTH CenpB-type DNA-binding domain	PFAM	PF03221	HTH_Tnp_Tc5	coord: 75..135 e-value: 2.9E-17 score: 62.4
IPR006600	HTH CenpB-type DNA-binding domain	PROSITE	PS51253	HTH_CENPB	coord: 65..136 score: 15.793
IPR004875	DDE superfamily endonuclease domain	PFAM	PF03184	DDE_1	coord: 202..373 e-value: 1.7E-27 score: 96.1
None	No IPR available	GENE3D	1.10.10.60		coord: 15..69 e-value: 9.3E-6 score: 25.1
None	No IPR available	GENE3D	1.10.10.60		coord: 72..131 e-value: 1.5E-18 score: 66.6
IPR009057	Homeobox domain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 10..64
IPR009057	Homeobox domain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 67..131

Blast

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BLAST of TCONS_00017436-protein vs. Swiss-Prot (Human)
Match: TIGD4 (Tigger transposable element-derived protein 4 OS=Homo sapiens GN=TIGD4 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 6.372e-65
Identity = 155/496 (31.25%), Postives = 248/496 (50.00%), Query Frame = 0

Query:   11 KEVSLQTKYMALLELESGKTNKEVCLMFEVPSNTISTWKKNKSKIFEALRN--GSPASKRLRVDKFDQINKAVLQWFHQMQLDNVIINRPMVREKALSFAKEMGVENFHASNGWLEKWKKRYNVSFKTASEAAKAERDGM-MPPSI---EATLPMLLSRYTLKDIFNAKEFGLFYQCLPGTISHLAEENCADGKHSSSRLTVVAVANAFG-ERMEIFVIGKPANPSSSEDVKNIPCRYRSQRKSWMDSSLFEEWVRELDTKFGESGRKVALIVSDSSAHPDIDGLQWVELIFIPPKTDSMTQPMDQGIVKYLKTKFRSLQVKKQILDCEKFNELSKLSIPAIMAMLLQAWLSIPAIMAMLLQAWHSIPFQTFTSSFKKAGLLIEATER-ISNDHDDEFVITILNELEANL-----LLLKEKFGLDYKL-TAEQLINIDSQVSVTGTLSDADIIAGVYGNSVDLSDDEPDQPQLEEKIVLRPSKNSVSNAIKTLEDY 492
            K +S++ K   +  +ESGK   E+   + +  N++S+  KNK K+ EA  +    P  KRLR   +  + +A+++W+   Q  NV +N PM+R KA  FA+++G  +F  SNGWL+++K RY + F+    A   E  G+ + PS    +  LP  L+ Y  K++FN KE GL Y+ LP        E C+ GK    R+T+V   N  G E++ + VIGK   P   + +K++P  Y + R +WM S +FE+W+R+LD +F    R+V + V    AHP++  L+ +EL F P    S    M QG++K LK K+R   +KK +   E   E +   + A+  + L                W ++  +T   S+++AG   +  E  I+N   D  +  + + L A +     L ++E   LD  L T E   N DS +    + SD     G Y      SD+E D      ++ L PSK+    A+ TL+ +
Sbjct:   19 KSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEAFESLRFDPKRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLGHNDFKCSNGWLDRFKSRYGLVFR----AQPVEATGVPVDPSTVWYQNVLPYYLNDYHPKNVFNIKETGLLYRMLPTNTFAFKGETCSVGKLCKDRITLVVGTNMDGSEKLPLLVIGKKRTPHCFKGLKSLPVCYEANRMAWMTSDVFEQWMRKLDEEFQAQQRRVVIFVESFPAHPEVKNLKSIELAFFPSCLSSKCIAMKQGVIKSLKIKYRHCLIKKFLSSVEGSKEFTFSLLDAVDTLHL---------------CWRAVTPETIVKSYEEAGFKSQKGESDITNAEKDTGLDLVADALGAGVEFPEGLSIEEYAALDDDLETCEAAPNGDS-ICTKESKSDE---TGFY-----TSDEEDDDGSPGTELPL-PSKSEAITALDTLKKF 485

The following BLAST results are available for this feature:

BLAST of TCONS_00017436-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017436-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TIGD4	6.372e-65	31.25	Tigger transposable element-derived protein 4 OS=H...	[more]

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TCONS_00017436-protein (polypeptide) - C. hemisphaerica