TCONS_00017686-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017686-protein
Unique Name	TCONS_00017686-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	555

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017686-protein ID=TCONS_00017686-protein|Name=TCONS_00017686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=555bp
MSIYQNEDTSTTITKGDGKSFLLQNLKEKDVEQQNKVVAEETKDTTDTEE
KRARWTNQREYLLSCIGFAVGLGNVWRFPWIVLRNGGGAFLIPYFTMLII
EGVPLLYLEISLGQIFQVGAAPLWIKLSRWSRGLGIASIVAGFLSSTFYR
IVTGWVFYYFAVSFQNPLPWSYCPKDSNGTSTTQNKCEQLGSTEYYWYYE
TLQITDDFNNPGTFSWQLFLCLTASYVIVFFCVIKRIQSAGKVVYFTVIF
PYLVLLILFVQGFMLEGYSEGLKLLFTPKWHRLTDLRVWKDAATQIFYSI
GVGYGGMLAFSSYNQQKESIMKNTMIIAVVNSVTSLFGSIAMFSILGYRA
TKKSQRCFNEHSKNPINGTKPLSIDCSVNHFIENTGGGTGLAFIAFTEAI
DLLPASNFFAIMFFLMLITLALDSLFGGLESIMTSIMDFKIFPNVKYVWK
LIIYMSISYVASSVNCLGTGDYMVQLFNDFGIDLIILFVTFSQLVVVCYI
YGFKRFSLKQKTVTGQDIPLFFQICWRFVSPIVIFVMIIMTLYQMEKNQF
AVQRL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009892	XLOC_009892	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017686	TCONS_00017686	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 325..345 score: 38.25 coord: 89..108 score: 53.52 coord: 483..503 score: 28.65 coord: 60..81 score: 64.98 coord: 133..159 score: 33.7 coord: 243..260 score: 58.01 coord: 403..422 score: 48.69 coord: 523..543 score: 28.96
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 52..550 e-value: 2.1E-146 score: 488.6
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS00754	NA_NEUROTRAN_SYMP_2	coord: 159..179
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 51..555 score: 75.646
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 52..546

Blast

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BLAST of TCONS_00017686-protein vs. Swiss-Prot (Human)
Match: S6A18 (Sodium-dependent neutral amino acid transporter B(0)AT3 OS=Homo sapiens GN=SLC6A18 PE=2 SV=2)

HSP 1 Score: 395.586 bits (1015), Expect = 5.650e-131
Identity = 203/539 (37.66%), Postives = 327/539 (60.67%), Query Frame = 0

Query:   38 VAEETKDTTDTEEKRARWTNQREYLLSCIGFAVGLGNVWRFPWIVLRNGGGAFLIPYFTMLIIEGVPLLYLEISLGQIFQVGAAPLWIKLSRWSRGLGIASIVAGFLSSTFYRIVTGWVFYYFAVSFQNPLPWSYCPKDSNGTSTTQNKCEQLGSTEYYWYYETLQITDDFNNPGTFSWQLFLCLTASYVIVFFCVIKRIQSAGKVVYFTVIFPYLVLLILFVQGFMLEGYSEGLKLLFTPKWHRLTDLRVWKDAATQIFYSIGVGYGGMLAFSSYNQQKESIMKNTMIIAVVNSVTSLFGSIAMFSILGYRATKKSQRCFNEH---------------SKNP-------INGTKPLSID------CSVNHFIENTGGGTGLAFIAFTEAIDLLPASNFFAIMFFLMLITLALDSLFGGLESIMTSIMDFKIFPNVKYVWKLI---IYMSISYVASSVNCLGTGDYMVQLFNDFGIDLIILFVTFSQLVVVCYIYGFKRFSLKQKTVTGQDIPLFFQICWRFVSPIV--IFVMIIMTLY 543
              E      D  ++R +W N+ +YLLSC GFAVGLGN+WRFP++    GGGAFLIPY   L+ EG+P+ ++E+++GQ  + G+  +W  +S +  G+G+  +   FL S +Y  +  WV +Y   SFQ+PLPWS CP D N T   + +C+   +  Y+WY +TL IT D N+ G+  W L +CL AS+ +V+ CVI+ I++ GKV+YFT +FPYLVL I  ++G  L G ++GL  LFTP  H L + RVW DAATQIF+S+ + +GG +AF+SYN  +    K+ ++IA+VN +TSL+ SIA+FS+LG++AT   + C + +               S++        +N T P  +       C +  F++ +  G GLAF+ FTE    +P +  +A++FF ML TL L ++FG +E+++T ++D  + P  ++V K     +   + +++++   L +G+Y +++F++F     +L + F ++V V Y+YG KRF      +TG+    ++++ WR VSP++  IFV  I+ L+
Sbjct:    4 APEPDPAACDLGDERPKWDNKAQYLLSCTGFAVGLGNIWRFPYLCQTYGGGAFLIPYVIALVFEGIPIFHVELAIGQRLRKGSVGVWTAISPYLSGVGLGCVTLSFLISLYYNTIVAWVLWYLLNSFQHPLPWSSCPPDLNRTGFVE-ECQGSSAVSYFWYRQTLNITADINDSGSIQWWLLICLAASWAVVYMCVIRGIETTGKVIYFTALFPYLVLTIFLIRGLTLPGATKGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNSPRNDCQKDAVVIALVNRMTSLYASIAVFSVLGFKATNDYEHCLDRNILSLINDFDFPEQSISRDDYPAVLMHLNATWPKRVAQLPLKACLLEDFLDKSASGPGLAFVVFTETDLHMPGAPVWAMLFFGMLFTLGLSTMFGTVEAVITPLLDVGVLP--RWVPKEALTGLVCLVCFLSATCFTLQSGNYWLEIFDNFAASPNLLMLAFLEVVGVVYVYGMKRFCDDIAWMTGRRPSPYWRLTWRVVSPLLLTIFVAYIILLF 539

The following BLAST results are available for this feature:

BLAST of TCONS_00017686-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017686-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S6A18	5.650e-131	37.66	Sodium-dependent neutral amino acid transporter B(...	[more]

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TCONS_00017686-protein (polypeptide) - C. hemisphaerica