TCONS_00017882-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017882-protein
Unique NameTCONS_00017882-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017882-protein ID=TCONS_00017882-protein|Name=TCONS_00017882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
MGCVISAASLACCCGSAACSLCCSCLPSCHNSTSTRIVYSIFLLFTTIIS
CIMLSPSVEQQLDKIDWLCGNANVDCKAVVGYMAVYRVEFGTVMFFLLLG
LLMIGVKSSRDPRSGIQNGFWAIKLVVLVGCIVGAFFIPKSDAFVQGWMI
VGLIGAFMFILVQLVLLVDFAHSWNESWVEKMEDNDSKCWMFALLFFTFA
MYGLSIAGIVCMFIYYAQSDTDSCKIEKFVVSFELVLGIVISAIAIHPKI
QERQAKSGLLQASAITLYTTYLTWSALSYRSTSCNQVRGNYKDKSLEPSV
DSQSILGVVVTFVLVIYACIRTSSSSQIGKLGLNTDNDGNVERAVLDQPA
DQNESAMGQQVVDDETESVTYSYTFFHMTMIFACLYLMMTITNWYKPNSN
MNELSSSDASFWVKMSSSWICFGLYMWTLIAPIVLPDRDFD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010019XLOC_010019Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017882TCONS_00017882Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005016TDE1/TMS
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005016Serine incorporator/TMS membrane proteinPFAMPF03348Serinccoord: 12..439
e-value: 3.0E-162
score: 540.3

Blast
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BLAST of TCONS_00017882-protein vs. Swiss-Prot (Human)
Match: SERC3 (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 4.384e-129
Identity = 206/477 (43.19%), Postives = 286/477 (59.96%), Query Frame = 0 
Query:    1 MGCVISAASLA----CCCGSAACSLCCSCLPSCHNSTSTRIVYSIFLLFTTIISCIMLSPSVEQQLDKIDWLCG----------NANVDCKAVVGYMAVYRVEFGTVMFFLLLGLLMIGVKSSRDPRSGIQNGFWAIKLVVLVGCIVGAFFIPKSDAFVQGWMIVGLIGAFMFILVQLVLLVDFAHSWNESWVEKMEDNDSKCWMFALLFFTFAMYGLSIAGIVCMFIYYAQSDTDSCKIEKFVVSFELVLGIVISAIAIHPKIQERQAKSGLLQASAITLYTTYLTWSALSYRS-TSCNQVRGNYKDKSLEPSV----------------------DSQSILGVVVTFVLVIYACIRTSSSSQIGKLGLNTDNDGNVERAVLDQPADQNESAMGQQVVDDETESVTYSYTFFHMTMIFACLYLMMTITNWYKPNSNMNELSSSDASFWVKMSSSWICFGLYMWTLIAPIVLPDRDF 440
            MG V+   SLA    C C  A+C L CSC P+  NST TR++Y+  LL +T++S IM    +E  L KI   C           NA+ DC  +VGY AVYR+ F   +FF +  LLM  VK+S+D R+ + NGFW  K+  L+G +VG+F+IP    F   W +VG+IGA +FIL+QLVLLVDFAHSWNESWV +ME+ + + W  ALL FT A Y LSI  +  ++ YY + D   C   KF +S  L+L +V S I+IHPKIQE Q +SGLLQ+S ITLYT YLTWSA+S     SCN    ++  +   P++                      DS + +G+ V  + ++Y+ IRTS++SQ+ KL L + +D  +        A   E    ++ VD+E E V YSY+ FH+ +  A LY+MMT+T+WY P++    ++S   + WVK+SSSW+C  LY+WTL+AP+VL  RDF
Sbjct:    1 MGAVLGVFSLASWVPCLCSGASC-LLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIP-GGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPD--GCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPDRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFIGLFVFVLCLLYSSIRTSTNSQVDKLTL-SGSDSVILGDTTTSGASDEEDGQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPDAKFQSMTSKWPAVWVKISSSWVCLLLYVWTLVAPLVLTSRDF 472
The following BLAST results are available for this feature:
BLAST of TCONS_00017882-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SERC34.384e-12943.19Serine incorporator 3 OS=Homo sapiens GN=SERINC3 P... [more]
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