TCONS_00018198-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018198-protein
Unique NameTCONS_00018198-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018198-protein ID=TCONS_00018198-protein|Name=TCONS_00018198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=743bp
MLYLLIIAVSISKSTSLIGPCMIDDSRIISGTTYHISSCLFCQCDKNTQQ
VSCYKKEFSGAVHRLCEDCRSLPTNVSCSYCEKPNNASVLIPVGNPIEIE
NAPGCISCNCSLIGDVSCFYYNHTLCDNRQSCRFALTDKNMDRLSCSNGC
IDPSSGFMRPEGTWETKEGIKCTCLKSLASCFHMKELGGYMFVTGCLPTQ
CTPEKYNALYVTGKDCEFNGQTVKHGTTSFAQVYNLKGCFQCTCYAGALQ
CESKGSWMEGSFPTFEFHAVVLQCSSVEKCEKEKSSPAIKKYCDANPIER
QCKGSYVWDTDFCKLNCTKLGQKPTYELTRKTWCSALPELKKKDCDFSCP
DRQLYMNMFGSSLVSCNSTDQMIWKDQICDGKQDCLNNDDEKDCENFFCR
YSFDHNQVLWSSIAVEETQEISCDQIPYLKRNYSKYGLKGKMLRKCNWKS
KMWTNETEWDNKIDCRCTIDGFPSFDTNVNLTYDSISNDMDRLYNHFNIS
PSNIQHYEKIVDLLNITLQKFQFDNSSEGNFVYQTTEWHEKNDLNLYNIF
KRAAKMKTTGRFCDTDNQQMDTLYFKLHEEYNIPFFNYSLFKSSFVKALG
AENKLIRKMLQMRKDNLMQRKEERIHQVPTIKTNIDKLEEILSAISIFCL
AIGLLAFQFVRNKSMKLFIHKNLILSFLLNAICYKIPLWFVQNLRAKSKA
GCFTVSVLSYFFTLSTFSWMMVEGINIXYRFCRTFSLCQHFHG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010226XLOC_010226Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018198TCONS_00018198Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
IPR002172LDrepeatLR_classA_rpt
IPR001879GPCR_2_extracellular_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000832GPCR, family 2, secretin-likePRINTSPR00249GPCRSECRETINcoord: 668..692
score: 33.49
coord: 704..727
score: 25.49
coord: 637..661
score: 20.07
IPR000832GPCR, family 2, secretin-likePFAMPF000027tm_2coord: 643..733
e-value: 5.4E-11
score: 42.2
NoneNo IPR availableGENE3D4.10.1220.10coord: 370..402
e-value: 9.6E-5
score: 21.8
NoneNo IPR availableGENE3D1.20.1070.10coord: 618..741
e-value: 4.7E-6
score: 25.2
IPR017981GPCR, family 2-likePROSITEPS50261G_PROTEIN_RECEP_F2_4coord: 632..743
score: 11.032
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 333..395
score: 8.688
IPR001879GPCR, family 2, extracellular hormone receptor domainPROSITEPS50227G_PROTEIN_RECEP_F2_3coord: 384..469
score: 9.809

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018198-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top