TCONS_00018233-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018233-protein
Unique NameTCONS_00018233-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018233-protein ID=TCONS_00018233-protein|Name=TCONS_00018233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MTKEEEANAASIDVVRIDSTDTDRKPKSCCLCLNVRIGTIMIGLFNLVCH
AFWIVSLSSYIKKHQSTELSEHLKEWKVINHFSDFSQQHQQNINHNMIAM
VVACLSFLIVVMLVYGATLRLSGYILPFFCLQVFDLCLSVLVFATVTSYA
PQLKYYLEVSAHDEVHRQYLQNMSLTHFRMVLFSFWIVVLAVKYYFANTV
WECYCHCKKMEERRNVRTDNQAAILLYQGDMETMNLLPTYDDVVKTSPPP
AYIQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010244XLOC_010244Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018233TCONS_00018233Clytia hemisphaericatranscript
Blast
[Close]
BLAST of TCONS_00018233-protein vs. Swiss-Prot (Human)
Match: LAP4B (Lysosomal-associated transmembrane protein 4B OS=Homo sapiens GN=LAPTM4B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.736e-23
Identity = 70/233 (30.04%), Postives = 112/233 (48.07%), Query Frame = 0 
Query:   27 KSCCLCLNVRIGTIMIGLFNLVCHAF-WIVSLSSYIKKHQSTELSEHLKEWKVINHFSDFSQQHQQNINHNMIAMVVACLSFLIVVMLVYGATLRLSGYILPFFCLQVFDLCLSVLVFATVTSYAPQLKYYLEVSAHDEVHRQYLQNMSLTHFRMVLFSFWIVVLAVKYYFANTVWECYCHCKKMEERRNVRTDNQAAILLYQGDMETMNLLPTYDDV----VKTSPPPAYIQ 254
             SCCLC +VR GTI++G++ L+ +A   ++ LS+     Q    S  L          DF      N+    IA+ ++ L  LI  M  YGA  + + +I+PFFC Q+FD  L++LV  TV  Y   ++ Y+     +  +R  + +++ T   +++  F  ++L  K Y  + VW CY         R +   N + +L+Y    +T  LLP YDD         PPP Y+ 
Sbjct:  157 NSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPDQYNFSSSELG--------GDFEFMDDANM---CIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVWNCY---------RYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVS 369
The following BLAST results are available for this feature:
BLAST of TCONS_00018233-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAP4B3.736e-2330.04Lysosomal-associated transmembrane protein 4B OS=H... [more]
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