TCONS_00018608-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018608-protein
Unique Name	TCONS_00018608-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	338

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018608-protein ID=TCONS_00018608-protein|Name=TCONS_00018608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MLLIIQLTMNYLHARGIAQRFTKGRRVSIIPNEETKEQEGASTLSERYQL
VLSIAKTVQNTLGQLSDSLEKLQNLYRWRHTEASKKLLYSLVVLFVLSCF
VSTGALLHFIVLTSALKLFIITPIYTRFPKVQRRYDDFMRLWHELPTHAE
HQRQEAMDAEDGAKSSSRESSPQPTSPRSNNQTNNTNEDGSNGNQATGST
SDSNVSWGTIIFCDRFQLPRAEAPFPDWVEGRRCTLMDKENPFTSMKHGR
LYLTANFLCFERNQFHSKKNIAISLAEIIKVKKSKPITFMPGPGMSIEVE
VTGISKPYVFAAMMGRDEALESIVRAGKSLNLPWASEM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010406	XLOC_010406	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018608	TCONS_00018608	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004182	GRAM

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..203
IPR004182	GRAM domain	PFAM	PF02893	GRAM	coord: 231..326 e-value: 1.3E-10 score: 41.0

Blast

[Close]

BLAST of TCONS_00018608-protein vs. Swiss-Prot (Human)
Match: GRAM4 (GRAM domain-containing protein 4 OS=Homo sapiens GN=GRAMD4 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.157e-46
Identity = 106/330 (32.12%), Postives = 169/330 (51.21%), Query Frame = 0

Query:    1 MLLIIQLTMNYLHARGIAQRFTKGRRVSIIP--NEETKEQEGASTLSERYQLVLSIAKTVQNTLGQLSDSLEKLQNLYRWRHTEASKKLLYSLVVLFVLSCFVSTGALLHFIVLTSALKLFIITPIYTRFPKVQRRYDDFMRLWHELPTHAE-HQRQEAMDAEDGAKSSSRESSPQPTSPRSNNQTNNTNEDGSNGNQATGSTSDSNVSWGTIIFCDRFQLPRAEAPFPDWVEGRRCTLM--DKENPFTSMKHGRLYLTANFLCFERNQF-HSKKNIAISLAEIIKVKKSKPITFMPGPGMSIEVEVTGISKPYVFAAMMGRDEALESIV 324
             L I++L++NYL ARG   ++      SI+P  +E  +  +   T+SE++QLVL +A+  QN  G+++D LEK++NL+ W   E ++KL  +L   F+ SCF     +   + L + +K F+I  I+ R P+++ +YD    +W  LPT  +  +R  A  +     +SSR   P   +     +          GN                 F + F L   E P      G RC L+  D++ P   +++G LY+T N+LCFE ++   SK+N  I L +I  ++K K ++ +PG GM I V      KP VF AM+ RDEA E+I+
Sbjct:  256 FLAILRLSLNYLIARGWRIQW------SIVPEVSEPVEPPKEDLTVSEKFQLVLDVAQKAQNLFGKMADILEKIKNLFMWVQPEITQKLYVALWAAFLASCFFPYRLVGLAVGLYAGIKFFLIDFIFKRCPRLRAKYDTPYIIWRSLPTDPQLKERSSAAVSRRLQTTSSRSYVPSAPAGLGKEEDAGRFHSTKKGN-----------------FHEIFNLTENERPLAVCENGWRCCLINRDRKMPTDYIRNGVLYVTENYLCFESSKSGSSKRNKVIKLVDITDIQKYKVLSVLPGSGMGIAVSTPSTQKPLVFGAMVHRDEAFETIL 562

The following BLAST results are available for this feature:

BLAST of TCONS_00018608-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018608-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRAM4	1.157e-46	32.12	GRAM domain-containing protein 4 OS=Homo sapiens G...	[more]

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TCONS_00018608-protein (polypeptide) - C. hemisphaerica