TCONS_00018734-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018734-protein
Unique NameTCONS_00018734-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018734-protein ID=TCONS_00018734-protein|Name=TCONS_00018734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
LQGFLVFHSFGGGTGSGFTSLLMEALSVEYGKKSKLEFAIYPAPQIFTAV
VEPYNAILMTHTTLEHTDCTFMVDNEAIYDICHRNICIERPTYTNLNRLI
GQIVSSVTASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPLMSAEKA
FHEQVSVEMITKQCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSA
ISFMKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLVRTQRAVCMLSNT
TAIVEAWARR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010485XLOC_010485Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018734TCONS_00018734Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 216..229
score: 93.16
coord: 190..211
score: 72.12
coord: 229..248
score: 75.17
coord: 83..95
score: 67.81
coord: 143..158
score: 65.28
coord: 254..260
score: 20.17
coord: 30..41
score: 82.49
coord: 17..29
score: 68.97
IPR000217TubulinPRINTSPR01161TUBULINcoord: 22..43
score: 42.92
coord: 3..21
score: 70.75
coord: 249..260
score: 20.84
coord: 47..60
score: 61.04
coord: 61..81
score: 59.79
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 1..115
e-value: 6.3E-8
score: 38.9
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 1..82
e-value: 7.0E-24
score: 85.0
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..134
e-value: 1.3E-62
score: 211.1
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..114
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 117..259
e-value: 7.9E-49
score: 178.2
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 135..252
e-value: 1.7E-56
score: 189.0
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 132..259
e-value: 2.4E-49
score: 166.6
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 11..17
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 115..259

Blast
[Close]
BLAST of TCONS_00018734-protein vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 464.151 bits (1193), Expect = 5.774e-165
Identity = 226/259 (87.26%), Postives = 243/259 (93.82%), Query Frame = 0 
Query:    1 LQGFLVFHSFGGGTGSGFTSLLMEALSVEYGKKSKLEFAIYPAPQIFTAVVEPYNAILMTHTTLEHTDCTFMVDNEAIYDICHRNICIERPTYTNLNRLIGQIVSSVTASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPLMSAEKAFHEQVSVEMITKQCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAISFMKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLVRTQRAVCMLSNTTAIVEAWAR 259
            LQGFL+FHSFGGGTGSGF SLLME LSV+YGKKSKLEFAIYPAPQ+ TAVVEPYN+IL THTTLEH+DC FMVDNEAIYDIC RN+ IERPTYTNLNRLIGQIVSS+TASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP++SAEKA+HEQ+SV  IT  CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVN+AI+ +KTKR+IQFVDWCPTGFKVGINYQPPTVVPGGDL + QRAVCMLSNTTAI EAWAR
Sbjct:  132 LQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
The following BLAST results are available for this feature:
BLAST of TCONS_00018734-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA3C5.774e-16587.26Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
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