TCONS_00018854-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018854-protein
Unique NameTCONS_00018854-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length215

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018854-protein ID=TCONS_00018854-protein|Name=TCONS_00018854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MQQEKEENVIATSLQNLIGRVSDIKMSIQNFMFKLEHETLSWPQMLDNFA
LLSGQISTLNKLLKNDRMPVLRNLCILPLMVSQERDTEMEEMTENRIPVV
THEVVPDALRTKYEPDVEKVEEELTLQSNSISVDMARSQVVALNDLIGSM
LDLIQNSRDWETESSVEQADLAPSANDTNILLAAITQGSGLRKSSSSRSS
SQRSSSQQRSSSHHH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010554XLOC_010554Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018854TCONS_00018854Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019364Mediatior_Med8_fun/met
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019364Mediator complex, subunit Med8, fungi/metazoaPFAMPF10232Med8coord: 3..207
e-value: 1.4E-52
score: 178.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..215

Blast
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BLAST of TCONS_00018854-protein vs. Swiss-Prot (Human)
Match: MED8 (Mediator of RNA polymerase II transcription subunit 8 OS=Homo sapiens GN=MED8 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.375e-49
Identity = 87/211 (41.23%), Postives = 134/211 (63.51%), Query Frame = 0 
Query:    4 EKEENVIATSLQNLIGRVSDIKMSIQNFMFKLEHET--LSWPQMLDNFALLSGQISTLNKLLKNDRMPVLRNLCILPLMVSQERDTEMEEMTENRIPVVTHEVVPDALRTKYEPDVEKVEEELTLQSNSISVDMARSQVVALNDLIGSMLDLIQNSRDWETESSVEQADLAP-----SANDTNILLAAITQGSGLRKSSSSRSSSQRSSSQ 207
            ++EE  +  SL  L+ +V+D+K S+ +F+ KLE+E   L+WP +LD+FALLSGQ++TLNK+LK+++ P+ RN  I+PL++S +RD ++   TE R+PV +HEVVPD LRTK +P+VE+ E++LT  +  I  D A+ Q+ +LN +  ++L+ I      + E   E   L P     +  DTN L+AA+  G GL     S SS    + Q
Sbjct:    2 QREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKIS-----KEERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQ 207
The following BLAST results are available for this feature:
BLAST of TCONS_00018854-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED87.375e-4941.23Mediator of RNA polymerase II transcription subuni... [more]
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