TCONS_00018926-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018926-protein
Unique NameTCONS_00018926-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018926-protein ID=TCONS_00018926-protein|Name=TCONS_00018926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp
MAAAAAGKTHHGNEIKTQFCTKEGKYRVLRLSDYSRPMNNTPNNIPVKLS
FVTLKGGGDSDGDNEDKIAFNIGRDMFFYNFRGVKKAPDLNHPIDRRTYK
GPIPTCHDINLMTRTPQSIDLLIGFTAGQIQLMDPIQHECRKCFNDERLI
EKGAVTCVKWLPGSESKFLVSYNNPNIYIYDKNLPSLITEPQLAVSKRGN
GYTVEVCKNKQDYNPLCRWKVGHGGVNELAFSPDCKHLAIASQDGYLRIF
DFEKQELISSMRSYFGGILCVCWSPDGKYVVTGGEDDLVTIWSFYEQRVV
ARGEGHRSWVNVVSFDAYTTQINDRFSLDNSEDEETNESSNASLNHSQSR
NKDVLSYRIGSVGDDTQLLLWDIDEEILKPQRVRTRSARVPTSVSSSSVN
VQPSWTFSSNTMKPSSRYDKNDEMPSSGKFHTLNRLTSKNQNSVSSYTPP
HVEMDDLLLGSKICPRMTETSKLEPLVAKKIAYDRISSLVFREDCIVTST
YEGYINVWARPDDPGVTDGGGGGTLIQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010608XLOC_010608Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018926TCONS_00018926Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 212..251
e-value: 6.2E-5
score: 32.4
coord: 137..181
e-value: 3.2
score: 13.8
coord: 472..509
e-value: 300.0
score: 1.3
coord: 296..372
e-value: 16.0
score: 9.3
coord: 254..293
e-value: 4.1E-7
score: 39.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 222..251
e-value: 2.9E-4
score: 21.5
coord: 266..293
e-value: 2.1E-5
score: 25.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 261..302
score: 12.313
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 226..260
score: 9.071
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 280..518
e-value: 6.7E-17
score: 61.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 94..199
e-value: 6.1E-5
score: 21.5
NoneNo IPR availableGENE3D2.140.10.30coord: 200..279
e-value: 2.2E-18
score: 65.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..347
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 219..316
score: 17.587
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 359..380
coord: 212..322
coord: 105..180

Blast
[Close]
BLAST of TCONS_00018926-protein vs. Swiss-Prot (Human)
Match: WDR20 (WD repeat-containing protein 20 OS=Homo sapiens GN=WDR20 PE=1 SV=2)

HSP 1 Score: 465.692 bits (1197), Expect = 1.619e-159
Identity = 255/571 (44.66%), Postives = 352/571 (61.65%), Query Frame = 0 
Query:    1 MAAAAAGKTHHGNEIKTQFCTKEGKYRVLRLSDYSRPMNNTPNNI----PVKLSFVTLKGGGDSDGDNEDKIAFNIGRDMFFYNFRGVKKAPDLNHPIDRRTYKGPIPTCHDINLMTRTPQSIDLLIGFTAGQIQLMDPIQHECRKCFNDERLIEKGAVTCVKWLPGSESKFLVSYNNPNIYIYDKNLPSLITEPQLAVSKRGNGYTVEVCKNKQDYNPLCRWKVGHGGVNELAFSPDCKHLAIASQDGYLRIFDFEKQELISSMRSYFGGILCVCWSPDGKYVVTGGEDDLVTIWSFYEQRVVARGEGHRSWVNVVSFDAYTTQINDRFSLDNSEDEE--------------TNESSNASLNHSQSRNKDVLSYRIGSVGDDTQLLLWDIDEEILKPQRVRTRSARVPTSVSSSSV--------------NVQPSWTFSSNTMKPS------SRYDKNDEMPSSG--KF--------------------HTLNRLTSKNQNSVSSYTPPHVEMDDLLLGSKICPRMTETSKLEPLVAKKIAYDRISSLVFREDCIVTSTYEGYINVWARP 511
            MA    GK    NEIKTQF T+EG Y++L  S+YSRP N  P N     PV++SFV L    D  G N D++ FN+GR+++FY ++GV+KA DL+ PID+R YKG  PTCHD N +T T +S+ LL+GF+AGQ+QL+DPI+ E  K FN+ERLI+K  VTCVKW+PGSES FLV++++ N+Y+Y+       T P   + K+G  + V  CK+K   NPL +W VG G +NE AFSPD K LA  SQDG+LR+F+F+  EL  +M+SYFGG+LCVCWSPDGKY+VTGGEDDLVT+WSF + RV+ARG GH+SWV+VV+FD YTT + +   ++ S  +E              + +S  +  N + SR   V +YR GSVG DTQL LWD+ E+IL P +  +R AR  T+V +++               N  P     SN++  S      S+    D   +SG  KF                    H++  ++SK+ + ++  T    +     LG+ +CPRM +   LEPL+ KKIA++R++ L+F EDCIVT+  EG+I  W RP
Sbjct:    1 MATEGGGKEM--NEIKTQFTTREGLYKLLPHSEYSRP-NRVPFNSQGSNPVRVSFVNLN---DQSG-NGDRLCFNVGRELYFYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSESLFLVAHSSGNMYLYNVEHTCGTTAPHYQLLKQGESFAVHTCKSKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSVELHGTMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVEEGDPMEFSGSDEDFQDLLHFGRDRANSTQSRLSKRNSTDSRPVSV-TYRFGSVGQDTQLCLWDLTEDILFPHQPLSR-ARTHTNVMNATSPPAGSNGNSVTTPGNSVPPPLPRSNSLPHSAVSNAGSKSSVMDGAIASGVSKFATLSLHDRKERHHEKDHKRNHSMGHISSKSSDKLNLVTKTKTDPAK-TLGTPLCPRMEDVPLLEPLICKKIAHERLTVLIFLEDCIVTACQEGFICTWGRP 561
The following BLAST results are available for this feature:
BLAST of TCONS_00018926-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR201.619e-15944.66WD repeat-containing protein 20 OS=Homo sapiens GN... [more]
back to top