TCONS_00018983-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018983-protein
Unique Name	TCONS_00018983-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	289

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018983-protein ID=TCONS_00018983-protein|Name=TCONS_00018983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
NNSIKKTSSQTKMARIMMAVTVVLFLLFCNKFIVGDKADKDEFKQDDIVM
KDNSSQGSKPSTCGACHGGRDGRDGHPGHPGRDGRDGCPGALGPKGQAGV
NGLPGTDGKNGINGKPGKNGSQGLPGKDGADGKPGKNGKNGINGKDRTAR
NIKQCAWKRLSTNNYDTTEIGLIKECSIQKRVASSELLVTVSTTIRVYSC
KNCCKRWFVTFDGDECAPVPIDHALYRYEASRDFIPLTLKGLCKVNKSGL
VRVGLNIEDCGSKTGSVDGDTGYYRSTFRILIEEVEPQS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010641	XLOC_010641	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018983	TCONS_00018983	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008160	Collagen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.160.20.50		coord: 59..156 e-value: 7.3E-4 score: 18.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..146
IPR008160	Collagen triple helix repeat	PFAM	PF01391	Collagen	coord: 69..120 e-value: 1.4E-7 score: 31.1 coord: 90..145 e-value: 4.7E-9 score: 35.8

Blast

[Close]

BLAST of TCONS_00018983-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.573e-25
Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 0

Query:   99 GVNGLPGTDGKNGINGKPGKNGSQGLPGKDGADGKPGKNGKNGINGKDRTARNIKQCAWKRLSTNNYDTTEIGLIKECSIQKRVASSELLVTVSTTIRVYSCKN-CCKRWFVTFDGDECA-PVPIDHALYRYEASRDFIPL-------TLKGLCKVNKSGLVRVGLNIEDCGSKTGSVDGDTGYYRSTFRILIEEV 285
            G  G+PG DG  G NG PG   + G+PG+DG  G+ G+  +     ++    N KQC+W  L   NY   ++G I EC+  K  ++S L V  S ++R+  C+N CC+RW+ TF+G EC+ P+PI+  +Y  + S +           +++GLC+   +GLV V + +  C S     D  TG + S  RI+IEE+
Sbjct:   58 GPAGVPGRDGSPGANGIPG---TPGIPGRDGFKGEKGECLRESF--EESWTPNYKQCSWSSL---NYGI-DLGKIAECTFTKMRSNSALRVLFSGSLRL-KCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTC-SDYPKGDASTG-WNSVSRIIIEEL 241

The following BLAST results are available for this feature:

BLAST of TCONS_00018983-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018983-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTHR1	9.573e-25	35.71	Collagen triple helix repeat-containing protein 1 ...	[more]

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TCONS_00018983-protein (polypeptide) - C. hemisphaerica