TCONS_00019057-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019057-protein
Unique Name	TCONS_00019057-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	386

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019057-protein ID=TCONS_00019057-protein|Name=TCONS_00019057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MPLTKKEVDELQPIIKETVTKRLGFPENAVIKAAVACLQEELDHDMATEK
MSSLLGDDLAPRFVEDLQNAASRFRRSKSAVRKRPSVADEDPESLKKAKL
NRLSALIDDEPLPPTLPEKTEKPPANMMENASNINAMVANVKRQIEERKK
MLIQSGVAPALIQQSDQRVQKTKEQQQQALRDEKAKRAAELQAKIAAKSN
KLLSGLSALKNLPIKPQPTQPAPDTVPISEMTRPAAVVLDAEGNPIDQAT
GRQISITKRMPTLKVNIRERKKEELKNEEVLPQASTATIEEDDRPMHFDP
RMGTAPATRGRRNFTFHRPGKFQQLGQKMRAKAQMEKLQRQIQEVAKKTG
ISSAAKLAMVAKKEEFETKYIPDIEWWDMALLPNHT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010675	XLOC_010675	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019057	TCONS_00019057	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002483	PWI_dom
IPR013881	Pre-mRNA_splic_Prp3

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..201
None	No IPR available	COILS	Coil	Coil	coord: 328..348
None	No IPR available	GENE3D	1.20.1390.10		coord: 4..72 e-value: 2.3E-9 score: 36.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..124
IPR002483	PWI domain	PFAM	PF01480	PWI	coord: 9..69 e-value: 1.1E-5 score: 25.6
IPR013881	Pre-mRNA-splicing factor 3	PFAM	PF08572	PRP3	coord: 297..384 e-value: 4.4E-19 score: 69.0

Blast

[Close]

BLAST of TCONS_00019057-protein vs. Swiss-Prot (Human)
Match: PRPF3 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.011e-57
Identity = 150/418 (35.89%), Postives = 227/418 (54.31%), Query Frame = 0

Query:    1 MPLTKKEVDELQPIIKETVTKRLGFPENAVIKAAVACLQEELDHDMATEKMSSLLGDDLAPRFVEDLQNAASRFRRSKSAVRKRPS--------VADEDPE------SLKKAKLNRLSALIDDEPLPPTLPEKTEKPPANMMENASNINAMVANVKRQIEERKKMLIQSGVAPALIQ----QSDQR----VQKTKEQQQQA--LRD--EKAKRAAELQAKIAAK--------SNKLLSGLSALKNLPIKPQPTQPAPDTVPISEMTRPAAVVLDAEGNPIDQATGRQISITKRMPTLKVNIRERKKEELKNEEVLPQASTATIEEDDRPMHFDPRMGTAPATRGRRNFTFHRPGKFQQLGQKMRAKAQMEKLQRQIQEVAKKTGISSAAKLAMVAKKEEFETKYIPDIEWWDMALLPN 384
            M L+K+E+DEL+P I++TV + LGF E  V+ AA+ C+ + +D   A + +   L DD   RFV+ L  A    R S+ +              V  +D E       +KK ++ R   + ++  + P  P  +E P    M     I  M+    RQIEERKK L  S ++P   Q     S Q     +  T +  Q A  + D  EKA++AAELQA+I A+         N  + GL+ L  + I       AP  V + + T+P  ++LD +G  +D ATG++I +T RMPTLK NIR  K+E+ K +  L +  +  +E +     FDPR+  AP+ R RR F FH  GKF+++ Q++R KAQ+EKLQ +I + A+KTGI ++ +LA++A K+E +   IP+IEWWD  ++PN
Sbjct:    1 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFL-DDSTLRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPP--SESPG---MLTKLQIKQMMEAATRQIEERKKQL--SFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI-------APPKVELKDQTKPTPLILDEQGRTVD-ATGKEIELTHRMPTLKANIRAVKREQFKQQ--LKEKPSEDMESN---TFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPN 397

The following BLAST results are available for this feature:

BLAST of TCONS_00019057-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019057-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRPF3	3.011e-57	35.89	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo...	[more]

You are here

TCONS_00019057-protein (polypeptide) - C. hemisphaerica