TCONS_00019588-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019588-protein
Unique NameTCONS_00019588-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019588-protein ID=TCONS_00019588-protein|Name=TCONS_00019588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MSDETVQPLPRKITSSHTLCADKSLSFHLTGEERSLLPTNNNNGIVKNDI
PEEFRSALKLYRGKEYEKAVELLEQCCDYYPPAQYQLACMSYDGLGKTEN
HSLAVKMMKEIVETSSPNYSVLIPCAQYNIGRAYYEGFGVKQSDREAEKW
WLLSVKDGDVSGCIKAQSILAMFYSRRGEETTDFKKSHYWHQEATANGSI
ESQATLGVMYEFGLGVVKDKESSFKCFKSAAEKGNIFAMGNLALQYFRFK
MFRNSLEVARKLVSLQDTAQLSRDTDCLEAYIKKGISLGLFLYGRCVEKG
VIEQLMEDGEELGEQEPPVYWYSKAAIMEPDTAQYMQDLVSHNEI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011012XLOC_011012Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019588TCONS_00019588Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 124..159
e-value: 7.4E-5
score: 32.1
coord: 81..116
e-value: 0.16
score: 21.0
coord: 164..199
e-value: 11.0
score: 13.3
coord: 200..235
e-value: 8.5E-8
score: 41.9
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 126..157
e-value: 3.4E-4
score: 21.1
coord: 201..235
e-value: 3.9E-6
score: 27.3
coord: 81..108
e-value: 0.11
score: 13.1
coord: 319..326
e-value: 160.0
score: 3.0
coord: 166..199
e-value: 0.076
score: 13.6
NoneNo IPR availableGENE3D2.60.40.1180coord: 59..159
e-value: 5.1E-14
score: 51.9
coord: 179..301
e-value: 9.3E-14
score: 51.0
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 56..261

Blast
[Close]
BLAST of TCONS_00019588-protein vs. Swiss-Prot (Human)
Match: LR2BP (LRP2-binding protein OS=Homo sapiens GN=LRP2BP PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.793e-61
Identity = 106/304 (34.87%), Postives = 173/304 (56.91%), Query Frame = 0 
Query:   45 IVKNDIPEEFRSALKLYRGKEYEKAVELLEQCCDYYPPAQYQLACMSYDGLGKTENHSLAVKMMKEIVETSSPNYSVLIPCAQYNIGRAYYEGFGVKQSDREAEKWWLLSVKDGDVSGCIKAQSILAMFYSRRGEETTDFKKSHYWHQEATANGSIESQATLGVMYEFGLGVVKDKESSFKCFKSAAEKGNIFAMGNLALQYFRFKMFRNSLEVARKLVS---LQDTAQLSRDTDCLEAYIKKGISLGLFLYGRCVEKGVIEQLMEDGEELGEQEPPVYWYSKAAIMEPDTAQYMQDLVSHNEI 345
            I+K D    F      +    YE+A+E  E+  +    A YQL  M YDGLG T +    V  MK+I+++  P    L   A YN+GRAYYEG GVK+S+ EAE+ WL++  +G+    +KAQS+L ++YS +  E  + +K+ YWH EA  NG++ESQ  LG+MY +G G+ +D E++ +C + AAE+GN++A GNL   Y++ K F   +  ++++     + D   +++ TDCL  +I +G+++  F + RC++ G+   +  D      +    ++YSKA  + P  A  +  L+    I
Sbjct:   54 ILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYYSTK--EPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRGMAMASFYHARCLQLGL--GITRD------ETTAKHYYSKACRLNPALADELHSLLIRQRI 347
The following BLAST results are available for this feature:
BLAST of TCONS_00019588-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LR2BP1.793e-6134.87LRP2-binding protein OS=Homo sapiens GN=LRP2BP PE=... [more]
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